Browse Element(s) Details


Os.50749.1.A1_at

Description gb:AK058278.1
DB_XREF= gi:32968296
TID=Os.50749.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50749 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-013-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-013-C08, full insert sequence.
FL= gb:AK058278.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4810410/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48070OsAffx.25617.1.S1_at11/113+27289000..27289427hypothetical protein
LOC_Os03g48080Os.2854.1.S1_at10/113+27292460..27295884CHCH domain containing protein, expressed
LOC_Os03g48090Os.2852.1.S1_at10/113+27296422..27300389Vegetatible incompatibility protein HET-E-1, putative, expressed
LOC_Os03g48100Os.52277.1.S1_x_at11/113+27300802..27307338expressed protein
LOC_Os03g48100Os.52277.1.S1_at9/113+27300802..27307338expressed protein
LOC_Os03g48104Os.50749.1.A1_at10/113+27312221..27313439expressed protein
LOC_Os03g48110Os.9082.1.S1_at9/113+27314050..27318264expressed protein
LOC_Os03g48120OsAffx.29738.3.S1_at11/113+27319292..27320224BTB/POZ domain containing protein
LOC_Os03g48120OsAffx.29738.3.S1_x_at11/113+27319292..27320224BTB/POZ domain containing protein
LOC_Os03g48140OsAffx.25619.1.S1_at11/113+27323367..27336685unconventional myosin heavy chain, putative, expressed
LOC_Os03g48140Os.10915.1.S1_at11/113+27323367..27336685unconventional myosin heavy chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50749.1.A1_at--489--3091Chr03:27312762..27312786 (25 bp)
AATACCCGATGGGAATGTTCCGCAA
LOC_Os03g48104
Os.50749.1.A1_at--507--6931Chr03:27312717..27312741 (25 bp)
GTAGGTGCTCTTCATGACAGTAACA
LOC_Os03g48104
Os.50749.1.A1_at--298--1531Chr03:27312693..27312717 (25 bp)
AGCAGTCTCCATGTTATCTTCGGAT
LOC_Os03g48104
Os.50749.1.A1_at--846--431Chr03:27312678..27312702 (25 bp)
ATCTTCGGATGTTTGCCTGATCGGA
LOC_Os03g48104
Os.50749.1.A1_at--986--51Chr03:27312601..27312625 (25 bp)
ATTGAGCAGGCCCATCAGGAGACGA
LOC_Os03g48104
Os.50749.1.A1_at--123--5411Chr03:27312571..27312595 (25 bp)
GAAGCTCATCAGGTTGCAAGTCGAT
LOC_Os03g48104
Os.50749.1.A1_at--739--6271Chr03:27312549..27312573 (25 bp)
GATGTAAAGCACTAGACCGCTGGAT
LOC_Os03g48104
Os.50749.1.A1_at--576--3491NONE
CAGGCTGATCAGTCGTTTCCATGGA
NONE
Os.50749.1.A1_at--952--1631Chr03:27312432..27312456 (25 bp)
AGCGTGCTTGCATATCTTGGCGAAA
LOC_Os03g48104
Os.50749.1.A1_at--91--2611Chr03:27312379..27312403 (25 bp)
AACGCTTTCTTATCTTCTCATTTAG
LOC_Os03g48104
Os.50749.1.A1_at--656--3451Chr03:27312339..27312363 (25 bp)
CAGTCGGACATCACTCTCAAGCAAA
LOC_Os03g48104
Target Sequence 
AATACCCGATGGGAATGTTCCGCAAGAGCTCCCCCGATAGAAGTTGTAGGTGCTCTTCATGACAGTAACAGCAGTCTCCA
TGTTATCTTCGGATGTTTGCCTGATCGGAATGTTCTTAATTCTGTTAAAAGTCTCAAACCAGTTCATATCGAGGCCTTTG
AATTGAGCAGGCCCATCAGGAGACGAGATGAGAAGCTCATCAGGTTGCAAGTCGATGTAAAGCACTAGACCGCTGGATAG
TGGAGCAGGCTGATCAGTCGTTTCCATGGATTCAGGCAGTGGAGTGATGGATGCAAGTTTGATGAGAATACAACGGCACC
ATGCCAGAGAAGCGTGCTTGCATATCTTGGCGAAATTGCTGTTTGACAGTTTGGGTGTTTTAAAACGCTTTCTTATCTTC
TCATTTAGTCCTTCAAGAACATCCAGTCGGACATCACTCTCAAGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50749.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis