Browse Element(s) Details


Os.2852.1.S1_at

Description gb:AK111863.1
DB_XREF= gi:37988526
TID=Os.2852.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.2852 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024B20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024B20, full insert sequence.
FL= gb:AK111863.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4809010/11Vegetatible incompatibility protein HET-E-1, putative, expressed
LOC_Os05g052801/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48060Os.2858.1.S1_at11/113+27283376..27287077glutamine amidotransferase class-I family protein, expressed
LOC_Os03g48070OsAffx.25617.1.S1_at11/113+27289000..27289427hypothetical protein
LOC_Os03g48080Os.2854.1.S1_at10/113+27292460..27295884CHCH domain containing protein, expressed
LOC_Os03g48090Os.2852.1.S1_at10/113+27296422..27300389Vegetatible incompatibility protein HET-E-1, putative, expressed
LOC_Os03g48100Os.52277.1.S1_x_at11/113+27300802..27307338expressed protein
LOC_Os03g48100Os.52277.1.S1_at9/113+27300802..27307338expressed protein
LOC_Os03g48104Os.50749.1.A1_at10/113+27312221..27313439expressed protein
LOC_Os03g48110Os.9082.1.S1_at9/113+27314050..27318264expressed protein
LOC_Os03g48120OsAffx.29738.3.S1_at11/113+27319292..27320224BTB/POZ domain containing protein
LOC_Os03g48120OsAffx.29738.3.S1_x_at11/113+27319292..27320224BTB/POZ domain containing protein
LOC_Os03g48140OsAffx.25619.1.S1_at11/113+27323367..27336685unconventional myosin heavy chain, putative, expressed
LOC_Os03g48140Os.10915.1.S1_at11/113+27323367..27336685unconventional myosin heavy chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2852.1.S1_at--138--6331Chr03:27297039..27297059 (21 bp)
GATGCACTTGCAACCACGATGAGGG
LOC_Os03g48090
Os.2852.1.S1_at--935--4991Chr03:27296828..27296852 (25 bp)
GCATGGTGCGAATCTGGGACAGCCT
LOC_Os03g48090
Os.2852.1.S1_at--735--3552Chr05:2580074..2580093 (20 bp)
CATCTTCGACATTTCCATGTTCAAG
LOC_Os05g05280
Os.2852.1.S1_at--1155--5131Chr03:27296623..27296647 (25 bp)
GCAAAACTGTACAATGGTCTCCTCA
LOC_Os03g48090
Os.2852.1.S1_at--409--7171Chr03:27296607..27296631 (25 bp)
GTCTCCTCAGCCACTTTGGTTATAG
LOC_Os03g48090
Os.2852.1.S1_at--488--6051Chr03:27296571..27296595 (25 bp)
GAGATTTTATACATGGAGCCACTGC
LOC_Os03g48090
Os.2852.1.S1_at--608--8091Chr03:27296557..27296581 (25 bp)
GGAGCCACTGCGAGTTGTACAATTA
LOC_Os03g48090
Os.2852.1.S1_at--480--7011Chr03:27296541..27296565 (25 bp)
GTACAATTAAACACCCTCGTCTAGG
LOC_Os03g48090
Os.2852.1.S1_at--242--3191Chr03:27296494..27296518 (25 bp)
CAATTTTTGTGTGAGCATTTGGCAT
LOC_Os03g48090
Os.2852.1.S1_at--81--6811Chr03:27296445..27296469 (25 bp)
GTTTTGCAGCATACTCTTTTGTTTT
LOC_Os03g48090
Os.2852.1.S1_at--69--6411Chr03:27296370..27296394 (25 bp)
GATCTAGCTGGTTGGACCAAACCTT
NONE
Target Sequence 
GATGCACTTGCAACCACGATGAGGGGGTGACATCCCTGGCATGGCTGGGCCCGTCCAGGTTCGTGGCGTCGGGGTGCATC
GACGGCATGGTGCGAATCTGGGACAGCCTCTCCGGGGAGTGCGTGAGGGCCTTCGCCGGCCACGGTGACGTCGTGCAGTC
CCTCGCCGTCTCTGCTGATGGCAACTCCATCGTCTCCGTGTCCACGGATGGCTCTGCCCTCATCTTCGACATTTCCATGT
TCAAGTGAAACCATAGTAGCAGTAGTTACCAATACATGATGAAGCCAACGCAAAACTGTACAATGGTCTCCTCAGCCACT
TTGGTTATAGGCCAGGGGATTGAGATTTTATACATGGAGCCACTGCGAGTTGTACAATTAAACACCCTCGTCTAGGGGAT
TACAACTGNAAGTCGAATCAATTTTTGTGTGAGCATTTGGCATGGATTAATAGCATATTTNCCTGATGTTTTGCAGCATA
CTCTTTTGTTTTCAATGCCAATGGTGTNTGCAATTGCAACATGCGTTTGGTTGTGTGTGTGGGATCTAGCTGGTTGGACC
AAACCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2852.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis