Browse Element(s) Details


OsAffx.13426.1.S1_at

Description tigr:9631.m04860
TID=OsAffx.13426.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g498109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49770Os.6670.1.S1_at11/113+28279127..28288339Oxysterol-binding protein, expressed
LOC_Os03g49770Os.57422.1.S1_x_at10/113+28279127..28288339Oxysterol-binding protein, expressed
LOC_Os03g49780OsAffx.25649.1.S1_at11/113+28292772..28293512hypothetical protein
LOC_Os03g49790OsAffx.25844.2.S1_at1/113+28294606..28295892Pattern formation protein EMB30, putative, expressed
LOC_Os03g49800Os.22464.1.S1_at11/113+28307285..28311784Phosphatidylinositol-4-phosphate 5-kinase 1, putative, expressed
LOC_Os03g49810OsAffx.13426.1.S1_at9/113+28313027..28314013hypothetical protein
LOC_Os03g49820OsAffx.3558.1.S1_at7/113+28321020..28324333hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13426.1.S1_at--15--5531Chr03:28313088..28313112 (25 bp)
GAAAAGGAGTGTGCCCGTATTACCG
LOC_Os03g49810
OsAffx.13426.1.S1_at--51--7471NONE
GTGTGCCCGTATTACCGGCATGGAA
NONE
OsAffx.13426.1.S1_at--1105--6831NONE
GTATTACCGGCATGGAAGCACAAGC
NONE
OsAffx.13426.1.S1_at--435--5391Chr03:28313868..28313892 (25 bp)
GAAGCACAAGCAGTTTGCTAGTTGA
LOC_Os03g49810
OsAffx.13426.1.S1_at--298--6851Chr03:28313880..28313904 (25 bp)
GTTTGCTAGTTGAGTTATGGGTGAA
LOC_Os03g49810
OsAffx.13426.1.S1_at--477--8611Chr03:28313897..28313921 (25 bp)
TGGGTGAAAGACTCCACGGACCACT
LOC_Os03g49810
OsAffx.13426.1.S1_at--715--1391Chr03:28313905..28313929 (25 bp)
AGACTCCACGGACCACTGTATAAAT
LOC_Os03g49810
OsAffx.13426.1.S1_at--936--5811Chr03:28313915..28313939 (25 bp)
GACCACTGTATAAATCCTAACGCCC
LOC_Os03g49810
OsAffx.13426.1.S1_at--1066--10151Chr03:28313923..28313947 (25 bp)
TATAAATCCTAACGCCCACAAACAT
LOC_Os03g49810
OsAffx.13426.1.S1_at--687--2191Chr03:28313951..28313975 (25 bp)
ACACACATGGGCATCATTCGTGTAA
LOC_Os03g49810
OsAffx.13426.1.S1_at--322--7591Chr03:28313959..28313983 (25 bp)
GGGCATCATTCGTGTAAGGATTGAA
LOC_Os03g49810
Target Sequence 
GAAAAGGAGTGTGCCCGTATTACCGGCATGGAAGCACAAGCAGTTTGCTAGTTGAGTTATGGGTGAAAGACTCCACGGAC
CACTGTATAAATCCTAACGCCCACAAACATCACACACACATGGGCATCATTCGTGTAAGGATTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13426.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis