Browse Element(s) Details


OsAffx.13453.1.S1_at

Description tigr:9631.m04993
TID=OsAffx.13453.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5110010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51060NANA3+29141702..29142233Leucine-rich repeat receptor protein kinase EXS precursor, putative
LOC_Os03g51080Os.9438.1.S1_at11/113+29150783..29159315Glutamate decarboxylase, putative, expressed
LOC_Os03g51080Os.17946.1.A1_x_at11/113+29150783..29159315Glutamate decarboxylase, putative, expressed
LOC_Os03g51090Os.20600.1.S1_x_at11/113+29160523..29162777F-box domain containing protein, expressed
LOC_Os03g51090Os.20600.1.S1_at11/113+29160523..29162777F-box domain containing protein, expressed
LOC_Os03g51100OsAffx.13453.1.S1_at10/113+29166962..29167964hypothetical protein
LOC_Os03g51110Os.49785.1.S1_at11/113+29186760..29188955Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13453.1.S1_at--956--2571Chr03:29167707..29167731 (25 bp)
AACGGGTCGAACAGGCTTAGCCCAT
LOC_Os03g51100
OsAffx.13453.1.S1_at--359--8231Chr03:29167670..29167694 (25 bp)
GGCAAGGGCGCCACAACGAATCGAA
LOC_Os03g51100
OsAffx.13453.1.S1_at--745--4251Chr03:29167633..29167657 (25 bp)
CCTGGATTCACCTTCCTCAAAAGAA
LOC_Os03g51100
OsAffx.13453.1.S1_at--751--891Chr03:29167567..29167591 (25 bp)
AGGCGCAGCGCCAACATCGAGTGGT
LOC_Os03g51100
OsAffx.13453.1.S1_at--387--6951Chr03:29167492..29167516 (25 bp)
GTAGAGAATCTCGTACCATTGTTCA
LOC_Os03g51100
OsAffx.13453.1.S1_at--829--2391Chr03:29167465..29167489 (25 bp)
AAACTATCTGTCACATCTGCTTCTT
LOC_Os03g51100
OsAffx.13453.1.S1_at--243--5151NONE
GCAACAGGGTTTCAGGCAGCCAGAT
NONE
OsAffx.13453.1.S1_at--470--1311Chr03:29167089..29167113 (25 bp)
AGATGTTGCTTCACTGCCACATGAA
LOC_Os03g51100
OsAffx.13453.1.S1_at--820--5171Chr03:29167059..29167083 (25 bp)
GCAAGTTTCCTCTTGTTCCATGTGA
LOC_Os03g51100
OsAffx.13453.1.S1_at--719--951Chr03:29167029..29167053 (25 bp)
AGGACTGCCGCATCTATGTTACTAC
LOC_Os03g51100
OsAffx.13453.1.S1_at--1052--711Chr03:29167014..29167038 (25 bp)
ATGTTACTACGGCTCGTGATCTTCA
LOC_Os03g51100
Target Sequence 
AACGGGTCGAACAGGCTTAGCCCATGGCAAGGCCGGAGGCAAGGGCGCCACAACGAATCGAACAGGCAACCAAGCCTGGA
TTCACCTTCCTCAAAAGAAGCATACCCCTCCAGCTCCACCACAAGCTCCACCTCAACCTCAGGCGCAGCGCCAACATCGA
GTGGTGAACGGGGAGGAGGTTCCATTTGAGGTGGAAGACCAGTATATTCATTACTGTAGAGAATCTCGTACCATTGTTCA
TAAAACTATCTGTCACATCTGCTTCTTTCAAGAACAAAACTTCACTGGGAGCAACAGGGTTTCAGGCAGCCAGATGTTGC
TTCACTGCCACATGAAGCACAGCAAGTTTCCTCTTGTTCCATGTGAGGCCGAGGACTGCCGCATCTATGTTACTACGGCT
CGTGATCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13453.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis