Browse Element(s) Details


OsAffx.13524.1.S1_at

Description tigr:9631.m05646
TID=OsAffx.13524.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5751011/11Calcium-dependent protein kinase, isoform AK1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57480NANA3+32705894..32711984retrotransposon protein, putative, unclassified
LOC_Os03g57490Os.23180.1.S1_at11/113+32717322..32721635beta-Ig-H3 domain-containing protein, putative, expressed
LOC_Os03g57490Os.25125.1.A1_at10/113+32717322..32721635beta-Ig-H3 domain-containing protein, putative, expressed
LOC_Os03g57500Os.26475.1.S1_at9/113+32722460..32726254zinc finger family protein, putative, expressed
LOC_Os03g57510OsAffx.13524.1.S1_at11/113+32730579..32733924Calcium-dependent protein kinase, isoform AK1, putative
LOC_Os03g57520OsAffx.13525.1.S1_x_at11/113+32736937..32737440VQ motif family protein, expressed
LOC_Os03g57530Os.8416.1.S1_at10/113+32739529..32741924expressed protein
LOC_Os03g57540NANA3+32749194..32749616hypothetical protein
LOC_Os03g57560OsAffx.13526.1.S1_x_at11/113+32751130..32761912Piwi domain containing protein, expressed
LOC_Os03g57560Os.50897.1.S1_at10/113+32751130..32761912Piwi domain containing protein, expressed
LOC_Os03g57560Os.51403.1.S1_at1/113+32751130..32761912Piwi domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006499biological_processN-terminal protein myristoylation
GO:0005777cellular_componentperoxisome
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13524.1.S1_at--131--8971Chr03:32731736..32731760 (25 bp)
TGACAAGCCTCTTGATTCCGCTGTC
LOC_Os03g57510
OsAffx.13524.1.S1_at--1051--6571Chr03:32731723..32731747 (25 bp)
GATTCCGCTGTCTTGAGTCGGTTAA
LOC_Os03g57510
OsAffx.13524.1.S1_at--702--1411Chr03:32731589..32731695 (25 bp)
AGAAAATGGCGCTTAGGGTTATTGC
LOC_Os03g57510
OsAffx.13524.1.S1_at--661--2251Chr03:32731517..32731541 (25 bp)
AAATGCTAGACACTGACAACAGCGG
LOC_Os03g57510
OsAffx.13524.1.S1_at--704--1631Chr03:32731497..32731521 (25 bp)
AGCGGTCATATTACACTGGAAGAAC
LOC_Os03g57510
OsAffx.13524.1.S1_at--108--6251Chr03:32731438..32731462 (25 bp)
GATGGACTCGGAAATTGATGCTCTA
LOC_Os03g57510
OsAffx.13524.1.S1_at--502--2971Chr03:32730989..32731438 (25 bp)
AATGGAGGCAGCAGATATTGACAAC
LOC_Os03g57510
OsAffx.13524.1.S1_at--956--3871Chr03:32730892..32730916 (25 bp)
CTGTTTGCAGCTTTCTCATACTTTG
LOC_Os03g57510
OsAffx.13524.1.S1_at--845--1311Chr03:32730863..32730887 (25 bp)
AGATGGCAGCGGTTACATTACTCAA
LOC_Os03g57510
OsAffx.13524.1.S1_at--876--6851Chr03:32730807..32730831 (25 bp)
GTATAGGTGATACCCGTATTGAGGA
LOC_Os03g57510
OsAffx.13524.1.S1_at--235--7671Chr03:32730609..32730633 (25 bp)
GGGTCAGCATAGTACCGGAAACTTT
LOC_Os03g57510
Target Sequence 
TGACAAGCCTCTTGATTCCGCTGTCTTGAGTCGGTTAAAACAATTTTCTGCAATGAACAAACTAAAGAAAATGGCGCTTA
GGGTTATTGCTGAGAGTTTATCAGAAGAAGAAATTGCAGGATTAAAAGAGATGTTCAAAATGCTAGACACTGACAACAGC
GGTCATATTACACTGGAAGAACTAAAAACAGGCTTGCAGAGAGTTGGTGCTAATTTGATGGACTCGGAAATTGATGCTCT
AATGGAGGCAGCAGATATTGACAACAGCGGAACAATTGATTATGGAGAATTCATTGCTGCAACTTTGCATATAAACAAAG
TAGAGAAGGAGGATAAGCTGTTTGCAGCTTTCTCATACTTTGATAAAGATGGCAGCGGTTACATTACTCAAGATGAGCTT
CAAAAGGCATGTGAGGAATTCGGTATAGGTGATACCCGTATTGAGGATATTATTGGAGACATTGATCAGGACAATGATGG
ACGGATCGACTACAATGAGTTTGTCGAAATGATGCAGAAGGGAAATAATGCAATGGGTAAAATGGGTCAGCATAGTACCG
GAAACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13524.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis