Browse Element(s) Details


OsAffx.13623.1.S1_at

Description tigr:9632.m00164
TID=OsAffx.13623.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0259011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02550Os.54925.1.S1_at11/114+931724..933844expressed protein
LOC_Os04g02560OsAffx.25840.1.S1_at11/114+946556..947133expressed protein
LOC_Os04g02570OsAffx.25841.1.S1_at11/114+954235..954648hypothetical protein
LOC_Os04g02580Os.52079.1.S1_at11/114+955074..956771expressed protein
LOC_Os04g02590OsAffx.13623.1.S1_at11/114+958618..959001hypothetical protein
LOC_Os04g02600OsAffx.15220.2.S1_s_at5/114+961396..966134retrotransposon protein, putative, LINE subclass
LOC_Os04g02600OsAffx.15220.1.S1_s_at4/114+961396..966134retrotransposon protein, putative, LINE subclass
LOC_Os04g02600Os.13877.1.S1_at1/114+961396..966134retrotransposon protein, putative, LINE subclass
LOC_Os04g02610NANA4+967480..967680hypothetical protein
LOC_Os04g02620Os.27281.1.S1_at11/114+971635..974161oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g02630OsAffx.13625.1.S1_at11/114+977818..979615hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13623.1.S1_at--630--891Chr04:958872..958896 (25 bp)
AGGCGGTCCTCCACAACAGTGAAGG
LOC_Os04g02590
OsAffx.13623.1.S1_at--462--3271Chr04:958859..958883 (25 bp)
CAACAGTGAAGGTAGTGGATCCGGT
LOC_Os04g02590
OsAffx.13623.1.S1_at--929--8931Chr04:958823..958847 (25 bp)
TGACGACGATGACAGCCGTGCTACT
LOC_Os04g02590
OsAffx.13623.1.S1_at--419--4091Chr04:958772..958796 (25 bp)
CGACCGCGGCGTGGGCTTCAGCAGG
LOC_Os04g02590
OsAffx.13623.1.S1_at--179--3511Chr04:958740..958764 (25 bp)
CATGGTGAGATGTTGCGATGGAAAC
LOC_Os04g02590
OsAffx.13623.1.S1_at--256--6691Chr04:958729..958753 (25 bp)
GTTGCGATGGAAACTGGCAGTGCTT
LOC_Os04g02590
OsAffx.13623.1.S1_at--445--2571Chr04:958718..958742 (25 bp)
AACTGGCAGTGCTTGCGGCTGTCGT
LOC_Os04g02590
OsAffx.13623.1.S1_at--991--8671Chr04:958699..958723 (25 bp)
TGTCGTGGCCGGTGGCACCAATTTT
LOC_Os04g02590
OsAffx.13623.1.S1_at--993--8411Chr04:958693..958717 (25 bp)
GGCCGGTGGCACCAATTTTGAAATT
LOC_Os04g02590
OsAffx.13623.1.S1_at--380--9951Chr04:958665..958689 (25 bp)
TATCCCAAAATTGTTTTATCGGTGA
LOC_Os04g02590
OsAffx.13623.1.S1_at--365--10431Chr04:958650..958674 (25 bp)
TTATCGGTGATCCACTTTATCTCGC
LOC_Os04g02590
Target Sequence 
AGGCGGTCCTCCACAACAGTGAAGGTAGTGGATCCGGTGGCGGCTGCCATGACGACGATGACAGCCGTGCTACTCCAACC
CCCTCCCCTCTACTGCCTGGCGACCGCGGCGTGGGCTTCAGCAGGCGGCGGCCATGGTGAGATGTTGCGATGGAAACTGG
CAGTGCTTGCGGCTGTCGTGGCCGGTGGCACCAATTTTGAAATTTTTTATCCCAAAATTGTTTTATCGGTGATCCACTTT
ATCTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13623.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis