Browse Element(s) Details


OsAffx.13736.1.S1_at

Description tigr:9632.m00843
TID=OsAffx.13736.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0973011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09690OsAffx.22368.1.S1_x_at1/114+5176458..5179414retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09700NANA4+5180295..5182271retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09710OsAffx.20565.1.S1_at1/114+5182907..5185834retrotransposon protein, putative, unclassified
LOC_Os04g09720OsAffx.13735.1.S1_at11/114+5187951..5196589Serine carboxypeptidase family protein, expressed
LOC_Os04g09720Os.5061.1.S1_s_at10/114+5187951..5196589Serine carboxypeptidase family protein, expressed
LOC_Os04g09730OsAffx.13736.1.S1_at11/114+5202262..5202486hypothetical protein
LOC_Os04g09740NANA4+5204532..5205224transposon protein, putative, Pong sub-class, expressed
LOC_Os04g09750NANA4+5207079..5208881hypothetical protein
LOC_Os04g09760Os.46012.2.S1_x_at10/114+5211841..5218464retrotransposon protein, putative, unclassified
LOC_Os04g09760Os.46012.3.S1_x_at6/114+5211841..5218464retrotransposon protein, putative, unclassified
LOC_Os04g09760Os.27088.1.A1_x_at5/114+5211841..5218464retrotransposon protein, putative, unclassified
LOC_Os04g09760Os.54691.1.S1_x_at1/114+5211841..5218464retrotransposon protein, putative, unclassified
LOC_Os04g09770OsAffx.3756.1.S1_at11/114+5221481..5223329Ser/Thr protein kinase, putative
LOC_Os04g09780OsAffx.13738.1.S1_at11/114+5226855..5227870hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13736.1.S1_at--240--3032Chr04:5202294..5202318 (25 bp)
AATCGAAGTACTCCACCGCCTTCCT
LOC_Os04g09730
OsAffx.13736.1.S1_at--329--6991Chr04:5202301..5202325 (25 bp)
GTACTCCACCGCCTTCCTACAAAGA
LOC_Os04g09730
OsAffx.13736.1.S1_at--695--9811Chr04:5202318..5202342 (25 bp)
TACAAAGACCGACATACTCGGGCGT
LOC_Os04g09730
OsAffx.13736.1.S1_at--631--2332Chr04:5202321..5202345 (25 bp)
AAAGACCGACATACTCGGGCGTCAG
LOC_Os04g09730
OsAffx.13736.1.S1_at--408--1392Chr04:5202323..5202347 (25 bp)
AGACCGACATACTCGGGCGTCAGCG
LOC_Os04g09730
OsAffx.13736.1.S1_at--375--9671Chr04:5202342..5202366 (25 bp)
TCAGCGCCGGAAGAGGAGTCTCGTC
LOC_Os04g09730
OsAffx.13736.1.S1_at--360--8351Chr04:5202371..5202395 (25 bp)
GGCGTCGAGGGATACCGGCGAAGAG
LOC_Os04g09730
OsAffx.13736.1.S1_at--119--5332Chr04:5202390..5202414 (25 bp)
GAAGAGGTTGGCAGACATCGCCCTG
LOC_Os04g09730
OsAffx.13736.1.S1_at--176--2791Chr04:5202391..5202415 (25 bp)
AAGAGGTTGGCAGACATCGCCCTGC
LOC_Os04g09730
OsAffx.13736.1.S1_at--471--1013Chr06:20686237..20686256 (20 bp)
AGGTTGGCAGACATCGCCCTGCCAT
NONE
OsAffx.13736.1.S1_at--450--5052Chr06:20686238..20686262 (25 bp)
GCAGACATCGCCCTGCCATGGAGGC
NONE
Target Sequence 
AATCGAAGTACTCCACCGCCTTCCTACAAAGACCGACATACTCGGGCGTCAGCGCCGGAAGAGGAGTCTCGTCCTGGGGC
GTCGAGGGATACCGGCGAAGAGGTTGGCAGACATCGCCCTGCCATGGAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13736.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis