Browse Element(s) Details


OsAffx.13738.1.S1_at

Description tigr:9632.m00848
TID=OsAffx.13738.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0978011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09730OsAffx.13736.1.S1_at11/114+5202262..5202486hypothetical protein
LOC_Os04g09740NANA4+5204532..5205224transposon protein, putative, Pong sub-class, expressed
LOC_Os04g09750NANA4+5207079..5208881hypothetical protein
LOC_Os04g09760Os.46012.2.S1_x_at10/114+5211841..5218464retrotransposon protein, putative, unclassified
LOC_Os04g09760Os.46012.3.S1_x_at6/114+5211841..5218464retrotransposon protein, putative, unclassified
LOC_Os04g09760Os.27088.1.A1_x_at5/114+5211841..5218464retrotransposon protein, putative, unclassified
LOC_Os04g09760Os.54691.1.S1_x_at1/114+5211841..5218464retrotransposon protein, putative, unclassified
LOC_Os04g09770OsAffx.3756.1.S1_at11/114+5221481..5223329Ser/Thr protein kinase, putative
LOC_Os04g09780OsAffx.13738.1.S1_at11/114+5226855..5227870hypothetical protein
LOC_Os04g09790NANA4+5232252..5232725hypothetical protein
LOC_Os04g09800Os.54132.1.S1_at4/114+5234750..5240543SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 3, putative
LOC_Os04g09800OsAffx.18075.1.S1_x_at1/114+5234750..5240543SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 3, putative
LOC_Os04g09810Os.49733.1.S1_at11/114+5243678..5246761riboflavin biosynthesis protein RibD containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13738.1.S1_at--816--8131Chr04:5227442..5227466 (25 bp)
GGACATGGCCCAGGAGTTCTCGTTC
LOC_Os04g09780
OsAffx.13738.1.S1_at--267--8411Chr04:5227436..5227460 (25 bp)
GGCCCAGGAGTTCTCGTTCTACAAC
LOC_Os04g09780
OsAffx.13738.1.S1_at--937--10571Chr04:5227420..5227444 (25 bp)
TTCTACAACCCCAACATGACGAGCG
LOC_Os04g09780
OsAffx.13738.1.S1_at--445--9431Chr04:5227290..5227314 (25 bp)
TCGGGCAGACGAACATCACCGGCGA
LOC_Os04g09780
OsAffx.13738.1.S1_at--200--4111Chr04:5227259..5227283 (25 bp)
CGACAGCCTCTACGCGTTCGTGCAG
LOC_Os04g09780
OsAffx.13738.1.S1_at--295--8371Chr04:5227002..5227205 (25 bp)
GGCGTCGCTGCCCATGACGAGAGGA
LOC_Os04g09780
OsAffx.13738.1.S1_at--181--8371Chr04:5226976..5227000 (25 bp)
GGCGTGCCTACTCGCTGACGTGCTA
LOC_Os04g09780
OsAffx.13738.1.S1_at--458--3851Chr04:5226962..5226986 (25 bp)
CTGACGTGCTACACGCGGTTCGAGG
LOC_Os04g09780
OsAffx.13738.1.S1_at--368--4071Chr04:5226942..5226966 (25 bp)
CGAGGTGGTGCCGTTCTACAGGCCA
LOC_Os04g09780
OsAffx.13738.1.S1_at--957--7491Chr04:5226938..5226962 (25 bp)
GTGGTGCCGTTCTACAGGCCACCGA
LOC_Os04g09780
OsAffx.13738.1.S1_at--403--4091Chr04:5226916..5226940 (25 bp)
CGACCGCGACGAACCTCGTGGTGGT
LOC_Os04g09780
Target Sequence 
GGACATGGCCCAGGAGTTCTCGTTCTACAACCCCAACATGACGAGCGCCGGCGACGCCGCCCAGTTCGGCGCCGCGCTCA
GCCGGCTCATGGACCGCCTCGCGCTCGCCGCCGCGTCGTCGTCGTCGTCTTCCCGTGGCCGGCGGTTCGCGTTCGGGCAG
ACGAACATCACCGGCGACGGCGGCGACAGCCTCTACGCGTTCGTGCAGTGCGTCGACGACCTCTCGCCGGACGACTGCCG
CCGCTGCCTCCAGAGCATCGCGGCGTCGCTGCCCATGACGAGAGGAGGGCGTGCCTACTCGCTGACGTGCTACACGCGGT
TCGAGGTGGTGCCGTTCTACAGGCCACCGACCGCGACGAACCTCGTGGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13738.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis