Browse Element(s) Details


Os.49733.1.S1_at

Description gb:AK063474.1
DB_XREF= gi:32973492
TID=Os.49733.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49733 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-A11, full insert sequence.
FL= gb:AK063474.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0981011/11riboflavin biosynthesis protein RibD containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09770OsAffx.3756.1.S1_at11/114+5221481..5223329Ser/Thr protein kinase, putative
LOC_Os04g09780OsAffx.13738.1.S1_at11/114+5226855..5227870hypothetical protein
LOC_Os04g09790NANA4+5232252..5232725hypothetical protein
LOC_Os04g09800Os.54132.1.S1_at4/114+5234750..5240543SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 3, putative
LOC_Os04g09800OsAffx.18075.1.S1_x_at1/114+5234750..5240543SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 3, putative
LOC_Os04g09810Os.49733.1.S1_at11/114+5243678..5246761riboflavin biosynthesis protein RibD containing protein, expressed
LOC_Os04g09820NANA4+5254300..5254509hypothetical protein
LOC_Os04g09830Os.31312.5.S1_x_at5/114+5257370..5261127retrotransposon protein, putative, unclassified, expressed
LOC_Os04g09830Os.31312.2.S1_x_at4/114+5257370..5261127retrotransposon protein, putative, unclassified, expressed
LOC_Os04g09830Os.31312.1.S1_at3/114+5257370..5261127retrotransposon protein, putative, unclassified, expressed
LOC_Os04g09840OsAffx.22492.1.S1_x_at1/114+5261236..5267391retrotransposon protein, putative, unclassified
LOC_Os04g09840OsAffx.22492.1.S1_at1/114+5261236..5267391retrotransposon protein, putative, unclassified
LOC_Os04g09860Os.9112.1.S1_at11/114+5270900..5286517Actin, putative, expressed
LOC_Os04g09860Os.9112.2.S1_at10/114+5270900..5286517Actin, putative, expressed
LOC_Os04g09860OsAffx.21318.2.S1_at1/114+5270900..5286517Actin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008270molecular_functionzinc ion binding
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49733.1.S1_at--770--3531Chr04:5244237..5244261 (25 bp)
CATCTTTCCCCTTACTTTTTGAGAT
LOC_Os04g09810
Os.49733.1.S1_at--1072--6771Chr04:5244155..5244179 (25 bp)
GTCTTTTAGGAGATCTTTTGGCCCA
LOC_Os04g09810
Os.49733.1.S1_at--803--5971Chr04:5244091..5244115 (25 bp)
GAGAACATTAGCACTAGCCAGACTT
LOC_Os04g09810
Os.49733.1.S1_at--569--6491Chr04:5243984..5244008 (25 bp)
GATAGACACCCAATTACAACAGCTT
LOC_Os04g09810
Os.49733.1.S1_at--107--7311Chr04:5243955..5243979 (25 bp)
GTGCTCCTTGCCCTCTAAAGATTAA
LOC_Os04g09810
Os.49733.1.S1_at--852--8551Chr04:5243866..5243890 (25 bp)
TGGAGTGGTTCAGTCCTGTGTTTAC
LOC_Os04g09810
Os.49733.1.S1_at--991--10151Chr04:5243813..5243837 (25 bp)
TATCATTTTCAGATGCCCTATGGCT
LOC_Os04g09810
Os.49733.1.S1_at--840--592Chr10:15465887..15465911 (25 bp)
ATGCCCTATGGCTACTTTTGTTTGG
NONE
Os.49733.1.S1_at--920--1771Chr04:5243748..5243772 (25 bp)
ACCGGATACCTGTCAACTTCGATGA
LOC_Os04g09810
Os.49733.1.S1_at--812--171Chr04:5243724..5243748 (25 bp)
ATTTTTTCTGTTTAGCTCAGCTCAG
LOC_Os04g09810
Os.49733.1.S1_at--69--5291Chr04:5243681..5243705 (25 bp)
GAATGTTAAATTGGCGCTGCTTGCT
LOC_Os04g09810
Target Sequence 
CATCTTTCCCCTTACTTTTTGAGATTTGCAATCAACAATCTATACTAGTGGCTGAAATCAAACAGGCTGGGATAGAGGGG
CTGTCTTTTAGGAGATCTTTTGGCCCAAGAGAGATGGATGAATGGGAAGAGCTGAGAGTCATAATTGAGAACATTAGCAC
TAGCCAGACTTATGATACTTTGAGATGGGCTCTAAAAGATAATAAAACCTTCACTACCCAGTCCCTTTACAGAGTTTTAA
CTTTCAGGGGGATGATAGACACCCAATTACAACAGCTTTGGAGTGCTCCTTGCCCTCTAAAGATTAAACACTTCATCTGG
TTAGGTTTGAGAGATAGAATTCAAGCCTCAGCTAATTTAGCAAAAAAGGGTTGGAGTGGTTCAGTCCTGTGTTTACTCTG
TGGGGAGCCAGAGACAACAAAACATATCATTTTCAGATGCCCTATGGCTACTTTTGTTTGGTGTTTGTGTAGAGATGTGC
TGGGTTGGGACCGGATACCTGTCAACTTCGATGATTTTTTCTGTTTAGCTCAGCTCAGAACTGTTTTCAAACACATGAAT
GTTAAATTGGCGCTGCTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49733.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis