Browse Element(s) Details


Os.9112.1.S1_at

Description gb:AK109896.1
DB_XREF= gi:32995105
TID=Os.9112.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9112 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-F02, full insert sequence.
FL= gb:AK109896.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0986011/11Actin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09810Os.49733.1.S1_at11/114+5243678..5246761riboflavin biosynthesis protein RibD containing protein, expressed
LOC_Os04g09820NANA4+5254300..5254509hypothetical protein
LOC_Os04g09830Os.31312.5.S1_x_at5/114+5257370..5261127retrotransposon protein, putative, unclassified, expressed
LOC_Os04g09830Os.31312.2.S1_x_at4/114+5257370..5261127retrotransposon protein, putative, unclassified, expressed
LOC_Os04g09830Os.31312.1.S1_at3/114+5257370..5261127retrotransposon protein, putative, unclassified, expressed
LOC_Os04g09840OsAffx.22492.1.S1_x_at1/114+5261236..5267391retrotransposon protein, putative, unclassified
LOC_Os04g09840OsAffx.22492.1.S1_at1/114+5261236..5267391retrotransposon protein, putative, unclassified
LOC_Os04g09860Os.9112.1.S1_at11/114+5270900..5286517Actin, putative, expressed
LOC_Os04g09860Os.9112.2.S1_at10/114+5270900..5286517Actin, putative, expressed
LOC_Os04g09860OsAffx.21318.2.S1_at1/114+5270900..5286517Actin, putative, expressed
LOC_Os04g09870NANA4+5287292..5289085hypothetical protein
LOC_Os04g09880OsAffx.3759.1.S1_at11/114+5291443..5292815hypothetical protein
LOC_Os04g09880OsAffx.23961.1.S1_s_at1/114+5291443..5292815hypothetical protein
LOC_Os04g09880OsAffx.23961.2.S1_s_at1/114+5291443..5292815hypothetical protein
LOC_Os04g09900Os.16233.1.S1_a_at11/114+5298069..5306436Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os04g09910NANA4+5308069..5308886retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9112.1.S1_at--162--351Chr04:5274041..5274060 (20 bp)
ATAACAGGAACATCCTTGACAGCTT
LOC_Os04g09860
Os.9112.1.S1_at--617--3391Chr04:5274022..5274046 (25 bp)
CAGCTTTCCACGACTGTTTAGCAAA
LOC_Os04g09860
Os.9112.1.S1_at--624--8251Chr04:5273976..5274000 (25 bp)
GGCAGCACCGGTCAGCTTCAAGAAA
LOC_Os04g09860
Os.9112.1.S1_at--113--3071Chr04:5273952..5273976 (25 bp)
AATCTAGGTCCAAACTTGCTGAGAG
LOC_Os04g09860
Os.9112.1.S1_at--839--5591Chr04:5273916..5273940 (25 bp)
GACAAGGATGTGCTCGATGGTTTCA
LOC_Os04g09860
Os.9112.1.S1_at--522--6251Chr04:5273901..5273925 (25 bp)
GATGGTTTCATCCTCTTGATCACAT
LOC_Os04g09860
Os.9112.1.S1_at--766--3471Chr04:5273870..5273894 (25 bp)
CAGGTTGTCAGGTGCACTAGTCCGT
LOC_Os04g09860
Os.9112.1.S1_at--83--1051Chr04:5273861..5273885 (25 bp)
AGGTGCACTAGTCCGTGTTTGGCAA
LOC_Os04g09860
Os.9112.1.S1_at--355--7431Chr04:5273847..5273871 (25 bp)
GTGTTTGGCAAGACAGTCCGCTAGT
LOC_Os04g09860
Os.9112.1.S1_at--760--5651Chr04:5273836..5273860 (25 bp)
GACAGTCCGCTAGTATACAGCTTAA
LOC_Os04g09860
Os.9112.1.S1_at--134--7871Chr04:5273779..5273803 (25 bp)
GGTATACAGTGCCAATTTTAAATCA
LOC_Os04g09860
Target Sequence 
ATAACAGGAACATCCTTGACAGCTTTCCACGACTGTTTAGCAAAACGAGTTACTGAAGGTTGAGGGGCAGCACCGGTCAG
CTTCAAGAAAATCTAGGTCCAAACTTGCTGAGAGAAGACGCATGAGACAAGGATGTGCTCGATGGTTTCATCCTCTTGAT
CACATAGTGGGCAGGTTGTCAGGTGCACTAGTCCGTGTTTGGCAAGACAGTCCGCTAGTATACAGCTTAAACGCTAAGCT
ATATAATTCATTTTCTAAACATGGTATACAGTGCCAATTTTAAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9112.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis