Browse Element(s) Details


Os.9112.2.S1_at

Description gb:AK105285.1
DB_XREF= gi:32990494
TID=Os.9112.2
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9112 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-E06, full insert sequence.
FL= gb:AK105285.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0986010/11Actin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09810Os.49733.1.S1_at11/114+5243678..5246761riboflavin biosynthesis protein RibD containing protein, expressed
LOC_Os04g09820NANA4+5254300..5254509hypothetical protein
LOC_Os04g09830Os.31312.5.S1_x_at5/114+5257370..5261127retrotransposon protein, putative, unclassified, expressed
LOC_Os04g09830Os.31312.2.S1_x_at4/114+5257370..5261127retrotransposon protein, putative, unclassified, expressed
LOC_Os04g09830Os.31312.1.S1_at3/114+5257370..5261127retrotransposon protein, putative, unclassified, expressed
LOC_Os04g09840OsAffx.22492.1.S1_x_at1/114+5261236..5267391retrotransposon protein, putative, unclassified
LOC_Os04g09840OsAffx.22492.1.S1_at1/114+5261236..5267391retrotransposon protein, putative, unclassified
LOC_Os04g09860Os.9112.1.S1_at11/114+5270900..5286517Actin, putative, expressed
LOC_Os04g09860Os.9112.2.S1_at10/114+5270900..5286517Actin, putative, expressed
LOC_Os04g09860OsAffx.21318.2.S1_at1/114+5270900..5286517Actin, putative, expressed
LOC_Os04g09870NANA4+5287292..5289085hypothetical protein
LOC_Os04g09880OsAffx.3759.1.S1_at11/114+5291443..5292815hypothetical protein
LOC_Os04g09880OsAffx.23961.1.S1_s_at1/114+5291443..5292815hypothetical protein
LOC_Os04g09880OsAffx.23961.2.S1_s_at1/114+5291443..5292815hypothetical protein
LOC_Os04g09900Os.16233.1.S1_a_at11/114+5298069..5306436Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os04g09910NANA4+5308069..5308886retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9112.2.S1_at--519--6111Chr04:5271401..5271425 (25 bp)
GAGTGCACTTCATGGTGGAAACCTT
LOC_Os04g09860
Os.9112.2.S1_at--118--7871Chr04:5271348..5271372 (25 bp)
GGACCCGGATGTACTAACCCTTCAG
LOC_Os04g09860
Os.9112.2.S1_at--1120--7031Chr04:5271285..5271309 (25 bp)
GTAATCTACTAACCCTGTAACTCGT
LOC_Os04g09860
Os.9112.2.S1_at--887--7051Chr04:5271269..5271293 (25 bp)
GTAACTCGTATTGTCGCATCAGGAT
LOC_Os04g09860
Os.9112.2.S1_at--943--9631Chr04:5271251..5271275 (25 bp)
TCAGGATACACCTCCATGAGATCGT
LOC_Os04g09860
Os.9112.2.S1_at--1034--6031Chr04:5271234..5271258 (25 bp)
GAGATCGTGTAGACATGCTTTGTGA
LOC_Os04g09860
Os.9112.2.S1_at--194--8891Chr04:5271185..5271209 (25 bp)
TGAGTTGCATCCGTTATTCTTGACA
LOC_Os04g09860
Os.9112.2.S1_at--143--10471Chr04:5271083..5271107 (25 bp)
TTACCATCATTTGTGCACCGATAAG
LOC_Os04g09860
Os.9112.2.S1_at--220--5471Chr04:5271047..5271071 (25 bp)
GAACTGCACCAGTCAACAGCAATTA
LOC_Os04g09860
Os.9112.2.S1_at--11--1031Chr04:5271008..5271032 (25 bp)
AGGTCTTACTATCACAAGTCCTAGA
LOC_Os04g09860
Os.9112.2.S1_at--1023--91NONE
ATTCGCGCTGCCATGTTAATCGACA
NONE
Target Sequence 
GAGTGCACTTCATGGTGGAAACCTTTGGATATAGCAGAAGGTTCATCAAGAAGGGACCCGGATGTACTAACCCTTCAGTT
AGAAGTAGCATTGCATGTAGAACATCTATTTTCACAGTAATCTACTAACCCTGTAACTCGTATTGTCGCATCAGGATACA
CCTCCATGAGATCGTGTAGACATGCTTTGTGAGGTCAGGAAATTGTATGCTGTGCATGAGTTGCATCCGTTATTCTTGAC
ANANNANNNGNNNNNNNNANNNNNNNNNNNGNNNGNNNCNNNGNNNNNNTTTATCATTTAATCTGATAGATTTTTTTTTT
ACCATCATTTGTGCACCGATAAGATAGTTGATTTGAACTGCACCAGTCAACAGCAATTATATGCGAGTGAACTAGGTCTT
ACTATCACAAGTCCTAGAATATACAAACAATTCCTTTCATGGATACCATGAGATAATTTTCATGCACACATGCCACCACC
AGAAATAAGGCAGTNCCAGTCTAGAAACTTGGTGTAACCAATTCGCAAGTATTGTACTGTTAAAAAAAAAAAAAAAAAAA
AACATTCGCGCTGCCATGTTAATCGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9112.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis