Browse Element(s) Details


OsAffx.13789.1.S1_at

Description tigr:9632.m01132
TID=OsAffx.13789.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1257011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12540OsAffx.26000.1.S1_at11/114+6918914..6922552D-mannose binding lectin family protein, expressed
LOC_Os04g12550NANA4+6931177..6931713hypothetical protein
LOC_Os04g12560NANA4+6935325..6937760D-mannose binding lectin family protein, expressed
LOC_Os04g12570OsAffx.13789.1.S1_at11/114+6939063..6939455hypothetical protein
LOC_Os04g12580NANA4+6946439..6948875D-mannose binding lectin family protein
LOC_Os04g12589NANA4+6952647..6953046hypothetical protein
LOC_Os04g12600NANA4+6956674..6959088D-mannose binding lectin family protein, expressed
LOC_Os04g12610NANA4+6962324..6968403retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13789.1.S1_at--326--10791Chr04:6939319..6939343 (25 bp)
TTGTTGCACTGCCATTAGCTACCAG
LOC_Os04g12570
OsAffx.13789.1.S1_at--546--9971Chr04:6939300..6939324 (25 bp)
TACCAGCGCAACTTTTGTCGGCGAA
LOC_Os04g12570
OsAffx.13789.1.S1_at--328--7191Chr04:6939284..6939308 (25 bp)
GTCGGCGAAGTCATACCGTTCTTGG
LOC_Os04g12570
OsAffx.13789.1.S1_at--875--6731Chr04:6939267..6939291 (25 bp)
GTTCTTGGTGAGATCTGGGTGCCCC
LOC_Os04g12570
OsAffx.13789.1.S1_at--445--4331Chr04:6939243..6939267 (25 bp)
CCATATCCTTTGTCTATCGCACAAG
LOC_Os04g12570
OsAffx.13789.1.S1_at--245--10091Chr04:6939214..6939238 (25 bp)
TAGGCAATGCCTTTGCAACCTGCTA
LOC_Os04g12570
OsAffx.13789.1.S1_at--190--9091Chr04:6939194..6939218 (25 bp)
TGCTACTGTCGTGCTCGGATGACAA
LOC_Os04g12570
OsAffx.13789.1.S1_at--680--1331Chr04:6939152..6939176 (25 bp)
AGAGGATATCTCTACCGTGCCATGC
LOC_Os04g12570
OsAffx.13789.1.S1_at--119--7291Chr04:6939136..6939160 (25 bp)
GTGCCATGCCGGAATGCCTTATCGT
LOC_Os04g12570
OsAffx.13789.1.S1_at--218--511Chr04:6939116..6939140 (25 bp)
ATCGTCGCCGGATATGCTAGAGCCA
LOC_Os04g12570
OsAffx.13789.1.S1_at--1004--251Chr04:6939105..6939129 (25 bp)
ATATGCTAGAGCCATGACCGACATG
LOC_Os04g12570
Target Sequence 
TTGTTGCACTGCCATTAGCTACCAGCGCAACTTTTGTCGGCGAAGTCATACCGTTCTTGGTGAGATCTGGGTGCCCCCAT
ATCCTTTGTCTATCGCACAAGAAGCTAGGCAATGCCTTTGCAACCTGCTACTGTCGTGCTCGGATGACAATGCAGCAAAT
GACAGGGAGAGGATATCTCTACCGTGCCATGCCGGAATGCCTTATCGTCGCCGGATATGCTAGAGCCATGACCGACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13789.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis