Browse Element(s) Details


OsAffx.13994.1.S1_at

Description tigr:9632.m02584
TID=OsAffx.13994.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Terpene synthase family, metal binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2743011/11Terpene synthase family, metal binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27400NANA4+15999802..16004365Terpene synthase family, metal binding domain containing protein
LOC_Os04g27410OsAffx.26184.1.S1_at10/114+16011868..16014471myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os04g27420NANA4+16018961..16025315retrotransposon protein, putative, LINE subclass
LOC_Os04g27430OsAffx.13994.1.S1_at11/114+16026664..16031220Terpene synthase family, metal binding domain containing protein
LOC_Os04g27440NANA4+16042977..16043391retrotransposon protein, putative, unclassified
LOC_Os04g27450OsAffx.13995.1.S1_at11/114+16046319..16047401hypothetical protein
LOC_Os04g27460OsAffx.13996.1.S1_at11/114+16048828..16050250hypothetical protein
LOC_Os04g27460OsAffx.13996.1.S1_x_at11/114+16048828..16050250hypothetical protein
LOC_Os04g27470NANA4+16053324..16053602terpene synthase 7, putative
LOC_Os04g27480Os.9332.2.S1_x_at1/114+16054834..16056239hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016106biological_processsesquiterpenoid biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13994.1.S1_at--77--5491Chr04:16027499..16027523 (25 bp)
GAACTTCAAGGTGCTTCAGGATCAA
LOC_Os04g27430
OsAffx.13994.1.S1_at--926--7011Chr04:16027457..16027481 (25 bp)
GTACAGGGTCACTTACACTAGAAAG
LOC_Os04g27430
OsAffx.13994.1.S1_at--386--8991Chr04:16027270..16027294 (25 bp)
TGAACCAAGCTTCGGTGACCAGATT
LOC_Os04g27430
OsAffx.13994.1.S1_at--794--9891Chr04:16027246..16027270 (25 bp)
TACTTTGACAGCTATGTCCTCGGTC
LOC_Os04g27430
OsAffx.13994.1.S1_at--92--3791Chr04:16027228..16027252 (25 bp)
CTCGGTCATTCCACTACTATGTGTG
LOC_Os04g27430
OsAffx.13994.1.S1_at--263--1691Chr04:16027153..16027177 (25 bp)
AGCCAGTAGAACCACCGCTATAGTA
LOC_Os04g27430
OsAffx.13994.1.S1_at--652--5431Chr04:16026808..16026832 (25 bp)
GAACCAGGCTCATTTCGAGGATCAT
LOC_Os04g27430
OsAffx.13994.1.S1_at--186--9831Chr04:16026784..16026808 (25 bp)
TAAACTGTTTCCTGTCGTGGAGCAA
LOC_Os04g27430
OsAffx.13994.1.S1_at--73--1251Chr04:16026760..16026784 (25 bp)
AGTTGTAAACCTGACTGCTTCCATG
LOC_Os04g27430
OsAffx.13994.1.S1_at--416--9071Chr04:16026745..16026769 (25 bp)
TGCTTCCATGGCTTCGTTTTACGAT
LOC_Os04g27430
OsAffx.13994.1.S1_at--1096--3351Chr04:16026694..16026718 (25 bp)
CACCCTTCTTCAGGACACTATTGAG
LOC_Os04g27430
Target Sequence 
GAACTTCAAGGTGCTTCAGGATCAAGTGACAGACAACGACAAGTACAGGGTCACTTACACTAGAAAGGAGTTCCAGAAAC
TGTCCACCTACTATCTCCAGGAAGCTGAACCAAGCTTCGGTGACCAGATTACTTTGACAGCTATGTCCTCGGTCATTCCA
CTACTATGTGTGAGTGGGACGGTAGGCATGGGTTATGTAACCATGGAAACATTTGAGTGGGTAGCCAGTAGAACCACCGC
TATAGTAGCATCGGCAAAAATTGGGCGTTTCATGAATGACATTGCCGCAATGAAGCGCGGAAAGAACAAAGGGGATGTTG
CGAGCTCCGTGGAGTGTTACATGAATGAGCACAAGGTGACGATGGAGGTTGCAATTGACAAGATTGATTCACTTGTAGAA
GATGAATGGAGAACATTGAACCAGGCTCATTTCGAGGATCATAAACTGTTTCCTGTCGTGGAGCAAGTTGTAAACCTGAC
TGCTTCCATGGCTTCGTTTTACGATGAAAGGAAGGATGCATATACATTTCCCACCCTTCTTCAGGACACTATTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13994.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis