Browse Element(s) Details


OsAffx.26184.1.S1_at

Description tigr:9632.m02582
TID=OsAffx.26184.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=myb-like DNA-binding domain, SHAQKYF class, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2741010/11myb-like DNA-binding domain, SHAQKYF class family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27380NANA4+15990438..15991052retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g27400NANA4+15999802..16004365Terpene synthase family, metal binding domain containing protein
LOC_Os04g27410OsAffx.26184.1.S1_at10/114+16011868..16014471myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os04g27420NANA4+16018961..16025315retrotransposon protein, putative, LINE subclass
LOC_Os04g27430OsAffx.13994.1.S1_at11/114+16026664..16031220Terpene synthase family, metal binding domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26184.1.S1_at--734--971Chr04:16014229..16014253 (25 bp)
AGGAGCTCGCCATCTGTCCGCGCAC
LOC_Os04g27410
OsAffx.26184.1.S1_at--564--6011NONE
GAGAGGGAGGATGATTGCCCCCGCC
NONE
OsAffx.26184.1.S1_at--911--9311Chr04:16012385..16012409 (25 bp)
TCCCAGTCTATACCAACGCGTGGCG
LOC_Os04g27410
OsAffx.26184.1.S1_at--651--3451Chr04:16012382..16012406 (25 bp)
CAGTCTATACCAACGCGTGGCGGAA
LOC_Os04g27410
OsAffx.26184.1.S1_at--1104--1151Chr04:16012381..16012405 (25 bp)
AGTCTATACCAACGCGTGGCGGAAG
LOC_Os04g27410
OsAffx.26184.1.S1_at--1143--3211Chr04:16012087..16012111 (25 bp)
CAAGTTCGGCAAGGGAGACTTGCAC
LOC_Os04g27410
OsAffx.26184.1.S1_at--276--2891Chr04:16012077..16012101 (25 bp)
AAGGGAGACTTGCACAGCATCTCGC
LOC_Os04g27410
OsAffx.26184.1.S1_at--746--1071Chr04:16012076..16012100 (25 bp)
AGGGAGACTTGCACAGCATCTCGCG
LOC_Os04g27410
OsAffx.26184.1.S1_at--393--5991Chr04:16012073..16012097 (25 bp)
GAGACTTGCACAGCATCTCGCGCAA
LOC_Os04g27410
OsAffx.26184.1.S1_at--653--1391Chr04:16012072..16012096 (25 bp)
AGACTTGCACAGCATCTCGCGCAAC
LOC_Os04g27410
OsAffx.26184.1.S1_at--290--1891Chr04:16011920..16011944 (25 bp)
ACGTTGCCGCGCAGCAGGGCCCGAT
LOC_Os04g27410
Target Sequence 
AGGAGCTCGCCATCTGTCCGCGCACGGGGGAGGATCTGGAGCTCGCCGGTGGTCAGGAGCGGCGGCAGTCGGCGCCGGCG
TCCGGAGGCCATGGGCAACGACGACCACGACGCCACCAGGCCGGGGGAGAGAAAGGGAGATAAGGGAGAGAGGGAGGGAG
GAGGAAGAAGAGAAGGAGAGGGAGGATGATTGCCCCCGCCTCCCAGTCTATACCAACGCGTGGCGGAAGAGCGGAGGCGG
CGGCAGGTACGACGGCGGCAAGAGCTGCTCCAAGGCGGAGCAGGAGAGGCGCAAGGGCATCCCATGGACGGAGGAAGAGC
ACAGGCTGTTCTTGCTGGGGCTGGACAAGTTCGGCAAGGGAGACTTGCACAGCATCTCGCGCAACTTCGTCATCTCGCGG
ACGCCGACGCAGGTGGCGAGCCACGCGCAGAAGTACTTCATACGCCTCAACTCCATGAACCGCGATCGTCGCCGCTCCAG
CATCCACGACATCACCAGCGTCACCGCCGGCGACGTTGCCGCGCAGCAGGGCCCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26184.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis