Browse Element(s) Details


OsAffx.14001.1.S1_at

Description tigr:9632.m02601
TID=OsAffx.14001.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g276009/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27550OsAffx.25936.2.S1_x_at2/114+16115549..16116723hypothetical protein
LOC_Os04g27550OsAffx.25936.5.S1_x_at1/114+16115549..16116723hypothetical protein
LOC_Os04g27550OsAffx.25936.1.S1_s_at1/114+16115549..16116723hypothetical protein
LOC_Os04g27560NANA4+16119763..16123743retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g27570NANA4+16126153..16127310retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g27580NANA4+16127721..16128530retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g27590NANA4+16131762..16133131transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g27600OsAffx.14001.1.S1_at9/114+16135516..16136708hypothetical protein
LOC_Os04g27600OsAffx.18122.1.S1_x_at1/114+16135516..16136708hypothetical protein
LOC_Os04g27610NANA4+16138342..16141674retrotransposon protein, putative, unclassified
LOC_Os04g27620OsAffx.26186.1.S1_at11/114+16142192..16144680expressed protein
LOC_Os04g27630OsAffx.15592.1.S1_at2/114+16144998..16150985retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g27630Os.31497.2.S1_x_at1/114+16144998..16150985retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g27640NANA4+16151597..16153096hypothetical protein
LOC_Os04g27650NANA4+16153819..16155199hypothetical protein
LOC_Os04g27660NANA4+16160656..16161851retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14001.1.S1_at--851--4691NONE
GCGGCGGTCGAGAGAAAGCTACTTA
NONE
OsAffx.14001.1.S1_at--827--8351NONE
GGCGGTCGAGAGAAAGCTACTTAAA
NONE
OsAffx.14001.1.S1_at--144--5931Chr04:16136524..16136544 (21 bp)
GAGAAAGCTACTTAAAACCCACATT
LOC_Os04g27600
OsAffx.14001.1.S1_at--838--2371Chr04:16136534..16136558 (25 bp)
AAACCCACATTAAACTCCATGTCAG
LOC_Os04g27600
OsAffx.14001.1.S1_at--675--10491Chr04:16136543..16136567 (25 bp)
TTAAACTCCATGTCAGAGCCACGTG
LOC_Os04g27600
OsAffx.14001.1.S1_at--395--2551Chr04:16136546..16136570 (25 bp)
AACTCCATGTCAGAGCCACGTGGGC
LOC_Os04g27600
OsAffx.14001.1.S1_at--650--4331Chr04:16136550..16136574 (25 bp)
CCATGTCAGAGCCACGTGGGCCTCG
LOC_Os04g27600
OsAffx.14001.1.S1_at--203--1911Chr04:16136563..16136587 (25 bp)
ACGTGGGCCTCGTACCACTATTGTA
LOC_Os04g27600
OsAffx.14001.1.S1_at--591--8351Chr04:16136568..16136592 (25 bp)
GGCCTCGTACCACTATTGTAGTCAA
LOC_Os04g27600
OsAffx.14001.1.S1_at--745--6971Chr04:16136574..16136598 (25 bp)
GTACCACTATTGTAGTCAAGCTTGA
LOC_Os04g27600
OsAffx.14001.1.S1_at--1017--11Chr04:16136582..16136603 (22 bp)
ATTGTAGTCAAGCTTGACCTGGAAA
LOC_Os04g27600
Target Sequence 
GCGGCGGTCGAGAGAAAGCTACTTAAAACCCACATTAAACTCCATGTCAGAGCCACGTGGGCCTCGTACCACTATTGTAG
TCAAGCTTGACCTGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14001.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis