Browse Element(s) Details


OsAffx.14100.1.S1_at

Description tigr:9632.m03131
TID=OsAffx.14100.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AP2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3279011/11AP2 domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32770NANA4+19578629..19584481retrotransposon protein, putative, unclassified
LOC_Os04g32780OsAffx.26292.1.S1_at11/114+19585827..19586553hypothetical protein
LOC_Os04g32790OsAffx.14100.1.S1_at11/114+19603029..19603907AP2 domain containing protein
LOC_Os04g32800Os.14324.1.S1_s_at11/114+19608876..19611004expressed protein
LOC_Os04g32800Os.14324.1.S1_at2/114+19608876..19611004expressed protein
LOC_Os04g32810Os.14324.1.S1_s_at1/114+19624933..19626935hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009873biological_processethylene mediated signaling pathway
GO:0009887biological_processorgan morphogenesis
GO:0010084biological_processspecification of organ axis polarity
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14100.1.S1_at--868--6431Chr04:19603422..19603446 (25 bp)
GATCAGCTGCTCCAGCCGTTCTACG
LOC_Os04g32790
OsAffx.14100.1.S1_at--829--6091Chr04:19603507..19603531 (25 bp)
GAGTCGAATTCGGCGGCGAGTACAT
LOC_Os04g32790
OsAffx.14100.1.S1_at--970--8871Chr04:19603561..19603585 (25 bp)
TGATGGACGACATTGCGGCCATGCC
LOC_Os04g32790
OsAffx.14100.1.S1_at--933--831Chr04:19603563..19603587 (25 bp)
ATGGACGACATTGCGGCCATGCCCG
LOC_Os04g32790
OsAffx.14100.1.S1_at--807--1511Chr04:19603632..19603656 (25 bp)
AGCAGCGACGAATACTCCAGCGGCG
LOC_Os04g32790
OsAffx.14100.1.S1_at--1160--7211Chr04:19603668..19603692 (25 bp)
GTCGACGACGTCTCCATGTACTGCG
LOC_Os04g32790
OsAffx.14100.1.S1_at--46--1871Chr04:19603672..19603696 (25 bp)
ACGACGTCTCCATGTACTGCGGCGG
LOC_Os04g32790
OsAffx.14100.1.S1_at--976--7151Chr04:19603677..19603701 (25 bp)
GTCTCCATGTACTGCGGCGGCAATG
LOC_Os04g32790
OsAffx.14100.1.S1_at--689--7191Chr04:19603712..19603736 (25 bp)
GTCGTGGTGCGACGCCTCCGACTTC
LOC_Os04g32790
OsAffx.14100.1.S1_at--104--3951Chr04:19603774..19603798 (25 bp)
CGGCAGGCTCGCACGGGATGTACTT
LOC_Os04g32790
OsAffx.14100.1.S1_at--359--4791Chr04:19603780..19603804 (25 bp)
GCTCGCACGGGATGTACTTCGAGGA
LOC_Os04g32790
Target Sequence 
GATCAGCTGCTCCAGCCGTTCTACGCCAATCCCTCCGCCGCCGCCGCGCTGCCCACTCCGGCGGCGGTGATGGCCGGAGG
AGGAGGAGTCGAATTCGGCGGCGAGTACATGTACGGCGGCGGCGTCGACATGTCGTCGCTGATGGACGACATTGCGGCCA
TGCCCGACGACCTCCCGCCCAGCGTGACGGGCGGCGGCGGCGGCTTCGCCAGCAGCGACGAATACTCCAGCGGCGGCGGC
GGGATGGTCGACGACGTCTCCATGTACTGCGGCGGCAATGGCGGAGGGTCGTCGTGGTGCGACGCCTCCGACTTCGCCTC
GTACTCGTCCTCCTCGCCGGCGGCGGCGGCGGCGGCAGGCTCGCACGGGATGTACTTCGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14100.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis