Browse Element(s) Details


Os.14324.1.S1_s_at

Description gb:BI805730
DB_XREF= gi:15852934
DB_XREF=S043H11
CLONE=S043H11
TID=Os.14324.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.14324 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3280011/11expressed protein
LOC_Os04g328101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32770NANA4+19578629..19584481retrotransposon protein, putative, unclassified
LOC_Os04g32780OsAffx.26292.1.S1_at11/114+19585827..19586553hypothetical protein
LOC_Os04g32790OsAffx.14100.1.S1_at11/114+19603029..19603907AP2 domain containing protein
LOC_Os04g32800Os.14324.1.S1_s_at11/114+19608876..19611004expressed protein
LOC_Os04g32800Os.14324.1.S1_at2/114+19608876..19611004expressed protein
LOC_Os04g32810Os.14324.1.S1_s_at1/114+19624933..19626935hypothetical protein
LOC_Os04g32820OsAffx.26295.1.S1_at11/114+19632003..19633064expressed protein
LOC_Os04g32830OsAffx.26295.2.S1_at11/114+19634661..19635554expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14324.1.S1_s_at--519--1232Chr04:19624952..19624976 (25 bp)
AGTTCGCCTGCGAGGAGAACTCCGA
LOC_Os04g32810
Os.14324.1.S1_s_at--201--6671Chr04:19609196..19609220 (25 bp)
GTTGCTTAATTTGACGTCGACGGTG
LOC_Os04g32800
Os.14324.1.S1_s_at--167--9751Chr04:19609190..19609214 (25 bp)
TAATTTGACGTCGACGGTGCTTCGT
LOC_Os04g32800
Os.14324.1.S1_s_at--263--7771Chr04:19609175..19609199 (25 bp)
GGTGCTTCGTTCTTTGCCTCGGAAG
LOC_Os04g32800
Os.14324.1.S1_s_at--550--10572Chr04:19609166..19609190 (25 bp)
TTCTTTGCCTCGGAAGTCGGGATAA
LOC_Os04g32800
Os.14324.1.S1_s_at--472--7192Chr04:19609151..19609175 (25 bp)
GTCGGGATAATGACGTCATCTGTGT
LOC_Os04g32800
Os.14324.1.S1_s_at--945--7112Chr06:27103059..27103081 (22 bp)
GTCATCTGTGTATATACGTAGTACG
NONE
Os.14324.1.S1_s_at--549--71Chr04:19609107..19609131 (25 bp)
ATTGCTGTACCTGTAATTGTTGTTA
LOC_Os04g32800
Os.14324.1.S1_s_at--420--3151Chr04:19609073..19609097 (25 bp)
AATTCAGTACTAGTCCCTGCTATAT
LOC_Os04g32800
Os.14324.1.S1_s_at--909--9611Chr04:19608968..19608992 (25 bp)
TCATGTCTATAAGTGACCGTGTTAT
LOC_Os04g32800
Os.14324.1.S1_s_at--198--2871Chr04:19608958..19608982 (25 bp)
AAGTGACCGTGTTATTTCGAATATA
LOC_Os04g32800
Target Sequence 
AGTTCGCCTGCGAGGAGAACTCCGACGTGTGCGTCATCATGTGACCAATTAATTAAGCTGTTGCTTAATTTGACGTCGAC
GGTGCTTCGTTCTTTGCCTCGGAAGTCGGGATAATGACGTCATCTGTGTATATACGTAGTACGTACGTATTGCTGTACCT
GTAATTGTTGTTATGTATGTAAAATTCAGTACTAGTCCCTGCTATATACGTTCTAAAAAAAAGTCCCTACTATACATATA
TATATACCTATATATAGTTCAAACAGAACGATTTCCCATATGGTCATGTCTATAAGTGACCGTGTTATTTCGAATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14324.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis