Browse Element(s) Details


OsAffx.26295.2.S1_at

Description tigr:9632.m03135
TID=OsAffx.26295.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3283011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32800Os.14324.1.S1_s_at11/114+19608876..19611004expressed protein
LOC_Os04g32800Os.14324.1.S1_at2/114+19608876..19611004expressed protein
LOC_Os04g32810Os.14324.1.S1_s_at1/114+19624933..19626935hypothetical protein
LOC_Os04g32820OsAffx.26295.1.S1_at11/114+19632003..19633064expressed protein
LOC_Os04g32830OsAffx.26295.2.S1_at11/114+19634661..19635554expressed protein
LOC_Os04g32840Os.49194.1.S1_at10/114+19638917..19640507expressed protein
LOC_Os04g32840OsAffx.22097.3.S1_at1/114+19638917..19640507expressed protein
LOC_Os04g32850Os.54602.1.S1_s_at11/114+19647736..19649497expressed protein
LOC_Os04g32850OsAffx.14103.1.S1_x_at11/114+19647736..19649497expressed protein
LOC_Os04g32850Os.27244.1.A1_s_at8/114+19647736..19649497expressed protein
LOC_Os04g32860Os.51171.1.S1_at11/114+19654178..19656880expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26295.2.S1_at--863--4251Chr04:19635137..19635161 (25 bp)
CCGGTGGAGGTCAACGTCAGCGTCA
LOC_Os04g32830
OsAffx.26295.2.S1_at--467--8551Chr04:19635133..19635157 (25 bp)
TGGAGGTCAACGTCAGCGTCAAGAC
LOC_Os04g32830
OsAffx.26295.2.S1_at--392--7091Chr04:19635128..19635152 (25 bp)
GTCAACGTCAGCGTCAAGACCGAGG
LOC_Os04g32830
OsAffx.26295.2.S1_at--168--4651Chr04:19635118..19635142 (25 bp)
GCGTCAAGACCGAGGTCACCGCGGA
LOC_Os04g32830
OsAffx.26295.2.S1_at--94--1551Chr04:19634781..19634805 (25 bp)
AGCATTTCTGCCAGCAGCGGCACTG
LOC_Os04g32830
OsAffx.26295.2.S1_at--846--1511Chr04:19634769..19634793 (25 bp)
AGCAGCGGCACTGCTCGTCGCAGTG
LOC_Os04g32830
OsAffx.26295.2.S1_at--650--8371Chr04:19634743..19634767 (25 bp)
GGCGTCAGCTGCAACTGCAACGTGA
LOC_Os04g32830
OsAffx.26295.2.S1_at--41--4771Chr04:19634736..19634760 (25 bp)
GCTGCAACTGCAACGTGAACGTCAT
LOC_Os04g32830
OsAffx.26295.2.S1_at--292--1911Chr04:19634724..19634748 (25 bp)
ACGTGAACGTCATGGTGTGCGAGCA
LOC_Os04g32830
OsAffx.26295.2.S1_at--59--1531Chr04:19634703..19634727 (25 bp)
AGCAGGAGGTTGGTCCATGCTCCGT
LOC_Os04g32830
OsAffx.26295.2.S1_at--829--7911Chr04:19634696..19634720 (25 bp)
GGTTGGTCCATGCTCCGTCATGTGA
LOC_Os04g32830
Target Sequence 
CCGGTGGAGGTCAACGTCAGCGTCAAGACCGAGGTCACCGCGGAGGCCAAGGCCGCCGCCGAGGCGGCCGCCAGGGCCGC
CGTCGCCGTCGTCATCAAGGAGAGGGGGCTGCAGCAGCACTGCGGCGGCAAGCCGCCGGGGTGCAAGATGGTGCCGTTCC
CGTACCCGGTGCCATACCCCGTGCCCTGCAAGTGCTGCCCGCACCGCCGCCGCCGCCATGCCCGCAGCGGCCCTGCTCGC
CGCGCCGTGCCCCCGGCCGCCGCCTCCATGCCCGCAGCGGTCCTGCTCGCCGCCGCCGTGCCTGCGGCCCTGCTCGCCGC
CGCCGTGTCCGCGGCCGCCGTGCCCGCCGCCGCCGCAGCATTTCTGCCAGCAGCGGCACTGCTCGTCGCAGTGGGGCGTC
AGCTGCAACTGCAACGTGAACGTCATGGTGTGCGAGCAGGAGGTTGGTCCATGCTCCGTCATGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26295.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis