Browse Element(s) Details


OsAffx.14103.1.S1_x_at

Description tigr:9632.m03138
TID=OsAffx.14103.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3285011/11expressed protein
LOC_Os09g200001/11heavy-metal-associated domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32810Os.14324.1.S1_s_at1/114+19624933..19626935hypothetical protein
LOC_Os04g32820OsAffx.26295.1.S1_at11/114+19632003..19633064expressed protein
LOC_Os04g32830OsAffx.26295.2.S1_at11/114+19634661..19635554expressed protein
LOC_Os04g32840Os.49194.1.S1_at10/114+19638917..19640507expressed protein
LOC_Os04g32840OsAffx.22097.3.S1_at1/114+19638917..19640507expressed protein
LOC_Os04g32850Os.54602.1.S1_s_at11/114+19647736..19649497expressed protein
LOC_Os04g32850OsAffx.14103.1.S1_x_at11/114+19647736..19649497expressed protein
LOC_Os04g32850Os.27244.1.A1_s_at8/114+19647736..19649497expressed protein
LOC_Os04g32860Os.51171.1.S1_at11/114+19654178..19656880expressed protein
LOC_Os04g32870OsAffx.26296.1.S1_at11/114+19661722..19663182pentatricopeptide, putative
LOC_Os04g32880Os.48035.1.S1_at10/114+19663926..19671656CBS domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
GO:0016298molecular_functionlipase activity
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14103.1.S1_x_at--840--4491Chr04:19648130..19648154 (25 bp)
GCCGTGGTGCTACACCGAGGACAAC
LOC_Os04g32850
OsAffx.14103.1.S1_x_at--141--2612Chr09:11976610..11976630 (21 bp)
AACGCCTGCTCCATCATGTGATGGC
LOC_Os09g20000
OsAffx.14103.1.S1_x_at--752--3931Chr04:19648073..19648097 (25 bp)
CGGCGGTCGGCGTCGATCACGATCA
LOC_Os04g32850
OsAffx.14103.1.S1_x_at--444--391Chr04:19648058..19648082 (25 bp)
ATCACGATCATCTCTGCTGCTTAAT
LOC_Os04g32850
OsAffx.14103.1.S1_x_at--778--9071Chr04:19648041..19648065 (25 bp)
TGCTTAATTTCCTTGCTTGCTACTA
LOC_Os04g32850
OsAffx.14103.1.S1_x_at--863--3671Chr04:19648007..19648031 (25 bp)
CTTTCCTTGCCTCGGAAATCGGAAT
LOC_Os04g32850
OsAffx.14103.1.S1_x_at--436--6211Chr04:19647971..19647995 (25 bp)
GAGGCTGATCGATGTGTTTGTAATT
LOC_Os04g32850
OsAffx.14103.1.S1_x_at--968--571Chr04:19647945..19647969 (25 bp)
ATCCATGGTGTTTGTGTTGTGTGCT
LOC_Os04g32850
OsAffx.14103.1.S1_x_at--415--10831Chr04:19647929..19647953 (25 bp)
TTGTGTGCTGTGTGGGCTGTATAAT
LOC_Os04g32850
OsAffx.14103.1.S1_x_at--1152--7511Chr04:19647820..19647844 (25 bp)
GTGGAGAGGCTCACTAAACTCATAA
LOC_Os04g32850
OsAffx.14103.1.S1_x_at--333--2391Chr04:19647797..19647821 (25 bp)
AAACTGTAGAGTATCTTGGCTGTAA
LOC_Os04g32850
Target Sequence 
GCCGTGGTGCTACACCGAGGACAACGCCAACGCCTGCTCCATCATGTGATGGCCGGCCGGCGGTCGGCGTCGATCACGAT
CATCTCTGCTGCTTAATTTCCTTGCTTGCTACTACCTCTGCTCCTTTCCTTGCCTCGGAAATCGGAATAAATTAAACACG
AGGCTGATCGATGTGTTTGTAATTAATCCATGGTGTTTGTGTTGTGTGCTGTGTGGGCTGTATAATAATTAATTACAGTA
TGTTCATGTAAATTTGTTTGTTTGTTTGTTTATGTTGTTCGATATGTATAATTATGTACAATAATTAATCGTGGAGAGGC
TCACTAAACTCATAAACTGTAGAGTATCTTGGCTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14103.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis