Browse Element(s) Details


Os.49194.1.S1_at

Description gb:AK110580.1
DB_XREF= gi:32995789
TID=Os.49194.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49194 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-168-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-168-E08, full insert sequence.
FL= gb:AK110580.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3284010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32810Os.14324.1.S1_s_at1/114+19624933..19626935hypothetical protein
LOC_Os04g32820OsAffx.26295.1.S1_at11/114+19632003..19633064expressed protein
LOC_Os04g32830OsAffx.26295.2.S1_at11/114+19634661..19635554expressed protein
LOC_Os04g32840Os.49194.1.S1_at10/114+19638917..19640507expressed protein
LOC_Os04g32840OsAffx.22097.3.S1_at1/114+19638917..19640507expressed protein
LOC_Os04g32850Os.54602.1.S1_s_at11/114+19647736..19649497expressed protein
LOC_Os04g32850OsAffx.14103.1.S1_x_at11/114+19647736..19649497expressed protein
LOC_Os04g32850Os.27244.1.A1_s_at8/114+19647736..19649497expressed protein
LOC_Os04g32860Os.51171.1.S1_at11/114+19654178..19656880expressed protein
LOC_Os04g32870OsAffx.26296.1.S1_at11/114+19661722..19663182pentatricopeptide, putative
LOC_Os04g32880Os.48035.1.S1_at10/114+19663926..19671656CBS domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49194.1.S1_at--139--1191Chr04:19639338..19639362 (25 bp)
AGTACGACGAGAACGCGTGCTCCGT
LOC_Os04g32840
Os.49194.1.S1_at--884--4611Chr04:19639299..19639323 (25 bp)
GCGGTAATTAATTTGCCTCGGAAAT
LOC_Os04g32840
Os.49194.1.S1_at--713--6651Chr04:19639249..19639273 (25 bp)
GTTGATGTTAATCCGGCGTTGTGTC
LOC_Os04g32840
Os.49194.1.S1_at--625--8471Chr04:19639222..19639246 (25 bp)
TGGCGCTCTGTGGTGTGTAAATCTA
LOC_Os04g32840
Os.49194.1.S1_at--480--3591Chr04:19639169..19639193 (25 bp)
CATTATTAGTATTGTGGCAGCCAAC
LOC_Os04g32840
Os.49194.1.S1_at--861--5071Chr04:19639153..19639177 (25 bp)
GCAGCCAACTGCCTACAAGAATAAT
LOC_Os04g32840
Os.49194.1.S1_at--119--2651Chr04:19639109..19639133 (25 bp)
AACCATGTAGTTTCTTGTCTATATT
LOC_Os04g32840
Os.49194.1.S1_at--128--6631Chr04:19639065..19639089 (25 bp)
GTTGTGTATGTTTGGCACGTATATG
LOC_Os04g32840
Os.49194.1.S1_at--95--3771NONE
CTCTTTTCTCTATTTCTTGTTTTGG
NONE
Os.49194.1.S1_at--1111--10851Chr04:19638960..19638984 (25 bp)
TTGGACTCTAAACATCAGCCCTTAT
LOC_Os04g32840
Os.49194.1.S1_at--679--2091Chr04:19638949..19638973 (25 bp)
ACATCAGCCCTTATGCTACGTTATA
LOC_Os04g32840
Target Sequence 
AGTACGACGAGAACGCGTGCTCCGTCATGTGATNTTTGAGCGGTAATTAATTTGCCTCGGAAATCGGAATGAATAAATTA
ACGCACGNCGTTGATGTTAATCCGGCGTTGTGTCCGTGGCGCTCTGTGGTGTGTAAATCTAAGTGAGTTGAATATCATTA
CAACACATTCATTATTAGTATTGTGGCAGCCAACTGCCTACAAGAATAATGTTTGTGCTTAAAAATTAAAACCATGTAGT
TTCTTGTCTATATTTGACATGTGTAATTAGTTTGTTGTGTATGTTTGGCACGTATATGTAATTTGTTTTGTCTATAATTG
ACATATTTCATATGTAATTAAAGTCNAATATNATTATCTCTTTTCTCTATTTCTTGTTTTGGACTCTAAACATCAGCCCT
TATGCTACGTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49194.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis