Browse Element(s) Details


OsAffx.1412.1.S1_at

Description gb:NM_187117.1
DB_XREF= gi:34901319
GEN=OSJNBb0015I22.9
TID=OsAffx.1412.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0015I22.9 (OSJNBb0015I22.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2680011/11retrotransposon protein, putative, unclassified
LOC_Os11g285603/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g249201/11retrotransposon protein, putative, unclassified
LOC_Os04g052601/11retrotransposon protein, putative, unclassified
LOC_Os08g101801/11retrotransposon protein, putative, unclassified
LOC_Os12g230101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26780NANA7+15464451..15472079retrotransposon protein, putative, unclassified
LOC_Os07g26790OsAffx.28608.1.S1_at11/117+15484182..15484609hypothetical protein
LOC_Os07g26800OsAffx.1412.1.S1_at11/117+15486274..15489112retrotransposon protein, putative, unclassified
LOC_Os07g26810NANA7+15489739..15494346retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1412.1.S1_at--208--3451Chr07:15488684..15488708 (25 bp)
CAGTTCGACGTCCTTGTCGGCAAAA
LOC_Os07g26800
OsAffx.1412.1.S1_at--380--9371Chr07:15488688..15488712 (25 bp)
TCGACGTCCTTGTCGGCAAAATTAA
LOC_Os07g26800
OsAffx.1412.1.S1_at--556--2631Chr07:15488725..15488779 (25 bp)
AACCAGGGATGAGGCCATGTTCTAT
LOC_Os07g26800
OsAffx.1412.1.S1_at--523--3471Chr07:15488728..15488782 (25 bp)
CAGGGATGAGGCCATGTTCTATAAT
LOC_Os07g26800
OsAffx.1412.1.S1_at--515--6092Chr07:15488794..15488818 (25 bp)
GAGTACATTCGATGCTTCTGAAGTG
LOC_Os07g26800
OsAffx.1412.1.S1_at--748--2071Chr07:15488798..15488822 (25 bp)
ACATTCGATGCTTCTGAAGTGTTTG
LOC_Os07g26800
OsAffx.1412.1.S1_at--528--9835Chr11:15973821..15973845 (25 bp)
TAAAGAAGCCGGAAGCATGGGAGCA
LOC_Os11g28560
OsAffx.1412.1.S1_at--290--812Chr11:15973837..15973861 (25 bp)
ATGGGAGCAAGCTTAGCCCTGGCGA
LOC_Os11g28560
OsAffx.1412.1.S1_at--59--2712Chr11:15973845..15973869 (25 bp)
AAGCTTAGCCCTGGCGATGACCAAA
LOC_Os11g28560
OsAffx.1412.1.S1_at--186--231Chr07:15488931..15488955 (25 bp)
ATATTGATACCGTCGATGGCTTTGC
LOC_Os07g26800
OsAffx.1412.1.S1_at--451--6491Chr07:15488936..15488960 (25 bp)
GATACCGTCGATGGCTTTGCGGATG
LOC_Os07g26800
Target Sequence 
CAGTTCGACGTCCTTGTCGGCAAAATTAAAAGACTTGAAGGAACCAGGGATGAGGCCATGTTCTATAATAACAATGGTCC
GAGTACATTCGATGCTTCTGAAGTGTTTGATAAGCTGAGAGTCGCTCCGGACACCTATTTCAAGAACATTAAAGAAGCCG
GAAGCATGGGAGCAAGCTTAGCCCTGGCGATGACCAAATCCCTATACCCGAAGATCGATATTGATACCGTCGATGGCTTT
GCGGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1412.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis