Browse Element(s) Details


OsAffx.28608.1.S1_at

Description tigr:9635.m02581
TID=OsAffx.28608.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2679011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26770NANA7+15459736..15460137hypothetical protein
LOC_Os07g26780NANA7+15464451..15472079retrotransposon protein, putative, unclassified
LOC_Os07g26790OsAffx.28608.1.S1_at11/117+15484182..15484609hypothetical protein
LOC_Os07g26800OsAffx.1412.1.S1_at11/117+15486274..15489112retrotransposon protein, putative, unclassified
LOC_Os07g26810NANA7+15489739..15494346retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28608.1.S1_at--197--5191Chr07:15484338..15484571 (25 bp)
GCAATGGTGGGTGATCAATGTTGAA
LOC_Os07g26790
OsAffx.28608.1.S1_at--80--6451Chr07:15484326..15484350 (25 bp)
GATCAATGTTGAAAGTCCGAACTAT
LOC_Os07g26790
OsAffx.28608.1.S1_at--741--2851Chr07:15484314..15484338 (25 bp)
AAGTCCGAACTATTCAGGATTTCAG
LOC_Os07g26790
OsAffx.28608.1.S1_at--886--2031Chr07:15484306..15484330 (25 bp)
ACTATTCAGGATTTCAGGTTCTCAA
LOC_Os07g26790
OsAffx.28608.1.S1_at--157--131Chr07:15484303..15484327 (25 bp)
ATTCAGGATTTCAGGTTCTCAACCG
LOC_Os07g26790
OsAffx.28608.1.S1_at--157--1011Chr07:15484299..15484323 (25 bp)
AGGATTTCAGGTTCTCAACCGAGAA
LOC_Os07g26790
OsAffx.28608.1.S1_at--1010--10311Chr07:15484295..15484319 (25 bp)
TTTCAGGTTCTCAACCGAGAAGAGC
LOC_Os07g26790
OsAffx.28608.1.S1_at--1126--10571Chr07:15484288..15484312 (25 bp)
TTCTCAACCGAGAAGAGCAGAGGAC
LOC_Os07g26790
OsAffx.28608.1.S1_at--325--1372Chr10:17169651..17169675 (25 bp)
AGAGCAGAGGACAGCACACAGGACA
NONE
OsAffx.28608.1.S1_at--355--1351Chr07:15484230..15484254 (25 bp)
AGAGAGAAAAAGCTCCGGCTGCAGA
LOC_Os07g26790
OsAffx.28608.1.S1_at--645--2411Chr07:15484223..15484247 (25 bp)
AAAAGCTCCGGCTGCAGAGAAAAAA
LOC_Os07g26790
Target Sequence
GCAATGGTGGGTGATCAATGTTGAAAGTCCGAACTATTCAGGATTTCAGGTTCTCAACCGAGAAGAGCAGAGGACAGCAC
ACAGGACAACACAGAAACTTGAAAAAAGAGAGAGAAAAAGCTCCGGCTGCAGAGAAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28608.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis