Browse Element(s) Details


OsAffx.14150.1.S1_at

Description tigr:9632.m03397
TID=OsAffx.14150.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3531011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35270OsAffx.14149.1.S1_at11/114+21260515..21262074Alpha4-fucosyltransferase, putative, expressed
LOC_Os04g35280Os.17484.1.S1_at11/114+21264182..21268657Neutral/alkaline invertase, putative, expressed
LOC_Os04g35290Os.9630.1.S1_at11/114+21274652..21277659Thioredoxin family protein, expressed
LOC_Os04g35300Os.9083.1.S1_at10/114+21279120..21281231expressed protein
LOC_Os04g35310OsAffx.14150.1.S1_at11/114+21285733..21287045BTB/POZ domain containing protein
LOC_Os04g35320NANA4+21292781..21295790retrotransposon protein, putative, unclassified
LOC_Os04g35330NANA4+21296417..21302573retrotransposon protein, putative, unclassified
LOC_Os04g35340OsAffx.14151.2.S1_s_at11/114+21304417..21305446BTB/POZ domain containing protein
LOC_Os04g35350OsAffx.14152.1.S1_at10/114+21306334..21310769expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14150.1.S1_at--729--5011Chr04:21286515..21286539 (25 bp)
GCAGTCGCCTCCTACAGTGGTGGTC
LOC_Os04g35310
OsAffx.14150.1.S1_at--670--9871Chr04:21286503..21286527 (25 bp)
TACAGTGGTGGTCCCGCCATCTGAC
LOC_Os04g35310
OsAffx.14150.1.S1_at--15--4171Chr04:21286120..21286144 (25 bp)
CGCCGATGATGTAGTGCGCGTCAAT
LOC_Os04g35310
OsAffx.14150.1.S1_at--695--1131Chr04:21286108..21286132 (25 bp)
AGTGCGCGTCAATATCGATGCTATG
LOC_Os04g35310
OsAffx.14150.1.S1_at--1139--8991Chr04:21286085..21286109 (25 bp)
TGAAGGTGCAGGACTTTGAGGCTCT
LOC_Os04g35310
OsAffx.14150.1.S1_at--773--4831Chr04:21285955..21285979 (25 bp)
GCTAAGGCTGGTGTGCGAACACAAG
LOC_Os04g35310
OsAffx.14150.1.S1_at--909--4591Chr04:21285941..21285965 (25 bp)
GCGAACACAAGCTATGCGAGTACGT
LOC_Os04g35310
OsAffx.14150.1.S1_at--58--6651Chr04:21285903..21285927 (25 bp)
GTTGTTGCCATGCTTGCATTTGCGG
LOC_Os04g35310
OsAffx.14150.1.S1_at--594--6311Chr04:21285831..21285855 (25 bp)
GATGACCCGGTGAAACTGAGATTGA
LOC_Os04g35310
OsAffx.14150.1.S1_at--1158--5191Chr04:21285784..21285808 (25 bp)
GAATTTGAGCAAAAGTTACCCTTCT
LOC_Os04g35310
OsAffx.14150.1.S1_at--1126--1171Chr04:21285771..21285795 (25 bp)
AGTTACCCTTCTATTTTGAAAGATG
LOC_Os04g35310
Target Sequence 
GCAGTCGCCTCCTACAGTGGTGGTCCCGCCATCTGACCTGCACCGGCACCTCGGAGGTCTCCTCGCCACCGGAGAGGGCG
CCGACGTGACGTTCGAGGTCGAGGGCAAGACGTTCGCGGCACACAGGTGGGTGCTCGCGGCCCGGTCTCCAGTGTTCCGT
GTGGCGCTCTTCGGCGCCACGACCGGTGGCGCCGATGATGTAGTGCGCGTCAATATCGATGCTATGAAGGTGCAGGACTT
TGAGGCTCTGCTCCACTACATGTACACCGACTCGCTGCCGGAGATGAAAGGAGGAGAGGCGGCGGCGATGCTCCCAGACC
TTGTCGCGGCGGCGAACAGGTACAAGATGGAGAGGCTAAGGCTGGTGTGCGAACACAAGCTATGCGAGTACGTGAACGGG
AGAACGGTTGTTGCCATGCTTGCATTTGCGGGGGAGCACCAGTGCAATGGCCTTAAGGAGAAGTGCCTGCGTTTTCTTGA
TGACCCGGTGAAACTGAGATTGATTGTGCAGGCAGAGGGAGTCGAGAATTTGAGCAAAAGTTACCCTTCTATTTTGAAAG
ATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14150.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis