Browse Element(s) Details


OsAffx.14331.1.S1_at

Description tigr:9632.m04720
TID=OsAffx.14331.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=kinetochore protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4870010/11H/ACA ribonucleoprotein complex subunit 4, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g48660OsAffx.22385.1.S1_x_at6/114+28790120..28796255retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g48660OsAffx.20329.1.S1_at2/114+28790120..28796255retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g48670OsAffx.28575.1.S1_at1/114+28796416..28797465hypothetical protein
LOC_Os04g48680NANA4+28801933..28803885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g48690NANA4+28808097..28808540hypothetical protein
LOC_Os04g48700OsAffx.14331.1.S1_at10/114+28810526..28817077H/ACA ribonucleoprotein complex subunit 4, putative
LOC_Os04g48700Os.13464.1.S1_at1/114+28810526..28817077H/ACA ribonucleoprotein complex subunit 4, putative
LOC_Os04g48710Os.8148.1.S1_a_at11/114+28823861..28827816expressed protein
LOC_Os04g48720OsAffx.26528.1.S1_at7/114+28836918..28838221hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009982molecular_functionpseudouridine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14331.1.S1_at--21--4151Chr04:28814053..28814077 (25 bp)
CGCGAGTTCGCTTAGATCGGCGCTG
LOC_Os04g48700
OsAffx.14331.1.S1_at--1095--1211Chr04:28814049..28814073 (25 bp)
AGTTCGCTTAGATCGGCGCTGGGTC
LOC_Os04g48700
OsAffx.14331.1.S1_at--422--8391Chr04:28814035..28814059 (25 bp)
GGCGCTGGGTCGTCGCGTGGATCAA
LOC_Os04g48700
OsAffx.14331.1.S1_at--284--5952Chr11:22371313..22371337 (25 bp)
GAGCACGATGCCGAGCGACACCTTG
NONE
OsAffx.14331.1.S1_at--452--1652Chr11:22371326..22371350 (25 bp)
AGCGACACCTTGCCGTGTTCTGGAT
NONE
OsAffx.14331.1.S1_at--311--4812Chr11:22371381..22371405 (25 bp)
GCTCTGTGTCCACCTTGGCCTGTTG
NONE
OsAffx.14331.1.S1_at--803--1731Chr04:28813660..28813684 (25 bp)
ACCTTGGCCTGTTGCTCGGTGTCGG
LOC_Os04g48700
OsAffx.14331.1.S1_at--668--9031Chr04:28813618..28813642 (25 bp)
TGCACCGCGTGCGATCAGGGATCCA
LOC_Os04g48700
OsAffx.14331.1.S1_at--915--5091Chr04:28813570..28813590 (21 bp)
GCACGATGTCATGGATGCGAGAAAA
LOC_Os04g48700
OsAffx.14331.1.S1_at--127--8831NONE
TGAGACCAAAGTTTTACTTGTCAAA
NONE
OsAffx.14331.1.S1_at--268--10811Chr04:28811008..28811032 (25 bp)
TTGTCAAAACTGAGAATGGAGGTCT
LOC_Os04g48700
Target Sequence 
CGCGAGTTCGCTTAGATCGGCGCTGGGTCGTCGCGTGGATCAAGCGCCTCCTCCGCGTCAACAAGACCGGGCACAGCGGC
ACGCTCGATCCCAAGGTCACCGGCAACCTCATCGTCTGCGTCGACCGCGCCACCCGCCTCGTCAAGTCGCAGCAGGGCGC
CGGCAAGGAGTACGTCTGCGTCGCGCGCTTCCACGCCGCCGACACCGCCCGCGCGCTCGAGGCGCTCACAGGCGCCATGT
TCCAGCGCCTCCCGCTCATCTCCGCCGTGAAGCGGCAGCTCAGGGTGAGGACTATCTATGAGAGCAAGCTGCTCGAGCAC
GATGCCGAGCGACACCTTGCCGTGTTCTGGATCTCCTGCGAGGCCGGGACGTATGTCAGGACGCTCTGTGTCCACCTTGG
CCTGTTGCTCGGTGTCGGCGCGCATATGCAGGAGCTGCACCGCGTGCGATCAGGGATCCACGGGGAGCAGGATAACATGG
TCACAATGCACGATGTCATGGATGCGAGAAAATCTAATATTGAGACCAAAGTTTTACTTGTCAAAACTGAGAATGGAGGT
CT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14331.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis