Browse Element(s) Details


OsAffx.14592.1.S1_at

Description tigr:9633.m00758
TID=OsAffx.14592.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0858011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08570Os.4822.1.S1_at11/115+4659483..4662516AUX/IAA family protein, expressed
LOC_Os05g08580OsAffx.14592.1.S1_at11/115+4677327..4678451hypothetical protein
LOC_Os05g08590OsAffx.14593.1.S1_at11/115+4680948..4681319hypothetical protein
LOC_Os05g08600Os.10119.1.S1_a_at11/115+4682716..4686676pre-mRNA splicing factor PRP38 family protein, putative, expressed
LOC_Os05g08610Os.49162.1.S1_at11/115+4688614..4693391Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g08620OsAffx.26788.1.S1_at11/115+4700845..4701480expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14592.1.S1_at--1017--5791Chr05:4677549..4677573 (25 bp)
GACCGTTAAGACCATCAAGCCGTTT
LOC_Os05g08580
OsAffx.14592.1.S1_at--1131--1591Chr05:4677590..4677614 (25 bp)
AGCTGCTCAAGGATGCCCGGGATGC
LOC_Os05g08580
OsAffx.14592.1.S1_at--799--8571Chr05:4677627..4677651 (25 bp)
TGGTTGCATAGTCAACGTGCTCGCC
LOC_Os05g08580
OsAffx.14592.1.S1_at--751--5451Chr05:4677670..4677694 (25 bp)
GAACGTCACAAGGTCATCGTGGACA
LOC_Os05g08580
OsAffx.14592.1.S1_at--117--1051Chr05:4677788..4677812 (25 bp)
AGGTGACTCTCTGTATGCTAAGCGA
LOC_Os05g08580
OsAffx.14592.1.S1_at--168--5411Chr05:4677849..4677873 (25 bp)
GAAGCTCATGTTTCGCATCAGGGCA
LOC_Os05g08580
OsAffx.14592.1.S1_at--67--9651Chr05:4677866..4677890 (25 bp)
TCAGGGCAGTCAGACTTGCTGTGCT
LOC_Os05g08580
OsAffx.14592.1.S1_at--662--2331Chr05:4677939..4677963 (25 bp)
AAAGTTGGCTCACCTAGGCTCTTTC
LOC_Os05g08580
OsAffx.14592.1.S1_at--675--1511Chr05:4677975..4678241 (25 bp)
AGCAGCCCTGGCGACAACACAATTG
LOC_Os05g08580
OsAffx.14592.1.S1_at--1122--3171Chr05:4678348..4678372 (25 bp)
AATTGGCCATATTTGCCCTTGAAGG
LOC_Os05g08580
OsAffx.14592.1.S1_at--1135--10711Chr05:4678366..4678390 (25 bp)
TTGAAGGTTTGTCCCACGGTCCACA
LOC_Os05g08580
Target Sequence 
GACCGTTAAGACCATCAAGCCGTTTGAAGAGGACTGTGAGCAGCTGCTCAAGGATGCCCGGGATGCCCACCAGCGAACTG
GTTGCATAGTCAACGTGCTCGCCATCCACCCCATCACCGGCGAACGTCACAAGGTCATCGTGGACAGCACCAACAACGGC
GATGTGTCCACCCTGGCTGAGGACCACTTCACTGTCCGCGTCGTGAGGAGGTACCTCCGTCTCAAGGGGCGGCTCGGTGA
GGTGACTCTCTGTATGCTAAGCGAGGAGCTCGTCGGTGCCATGAGGCTCGCCGATGTCAAGAAGCTCATGTTTCGCATCA
GGGCAGTCAGACTTGCTGTGCTGAGGCGGTCCAAGGCAGCGAGGATGTCCACCGCGCCGGAGCTGCTGCCAAAGTTGGCT
CACCTAGGCTCTTTCTTCCGTGCTCCAGCAGCCCTGGCGACAACACAATTGGCCATATTTGCCCTTGAAGGTTTGTCCCA
CGGTCCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14592.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis