Browse Element(s) Details


OsAffx.14593.1.S1_at

Description tigr:9633.m00759
TID=OsAffx.14593.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to photosystem II 22 kDa protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0859011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08570Os.4822.1.S1_at11/115+4659483..4662516AUX/IAA family protein, expressed
LOC_Os05g08580OsAffx.14592.1.S1_at11/115+4677327..4678451hypothetical protein
LOC_Os05g08590OsAffx.14593.1.S1_at11/115+4680948..4681319hypothetical protein
LOC_Os05g08600Os.10119.1.S1_a_at11/115+4682716..4686676pre-mRNA splicing factor PRP38 family protein, putative, expressed
LOC_Os05g08610Os.49162.1.S1_at11/115+4688614..4693391Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g08620OsAffx.26788.1.S1_at11/115+4700845..4701480expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14593.1.S1_at--400--451Chr05:4680978..4681002 (25 bp)
ATCTATGAGGTGGAGCCTCTCCTCC
LOC_Os05g08590
OsAffx.14593.1.S1_at--1004--8231Chr05:4681029..4681053 (25 bp)
GGCACCATTGGCAGCCGCGACAACT
LOC_Os05g08590
OsAffx.14593.1.S1_at--1057--11Chr05:4681035..4681059 (25 bp)
ATTGGCAGCCGCGACAACTTTGTCG
LOC_Os05g08590
OsAffx.14593.1.S1_at--696--5611Chr05:4681047..4681071 (25 bp)
GACAACTTTGTCGTCGATCAGCCGG
LOC_Os05g08590
OsAffx.14593.1.S1_at--381--2531Chr05:4681050..4681074 (25 bp)
AACTTTGTCGTCGATCAGCCGGCTA
LOC_Os05g08590
OsAffx.14593.1.S1_at--856--10771Chr05:4681054..4681078 (25 bp)
TTGTCGTCGATCAGCCGGCTACTGG
LOC_Os05g08590
OsAffx.14593.1.S1_at--1134--9651Chr05:4681064..4681088 (25 bp)
TCAGCCGGCTACTGGCCTCGACAAG
LOC_Os05g08590
OsAffx.14593.1.S1_at--368--2911Chr05:4681131..4681155 (25 bp)
AAGGTTGCCCTCACGCAGCTCAACA
LOC_Os05g08590
OsAffx.14593.1.S1_at--1136--1531Chr05:4681164..4681188 (25 bp)
AGCATCCCCGTCACTGAGATTGAGT
LOC_Os05g08590
OsAffx.14593.1.S1_at--29--7111Chr05:4681173..4681197 (25 bp)
GTCACTGAGATTGAGTCGCTCGTCC
LOC_Os05g08590
OsAffx.14593.1.S1_at--33--3871Chr05:4681177..4681201 (25 bp)
CTGAGATTGAGTCGCTCGTCCTCTT
LOC_Os05g08590
Target Sequence 
ATCTATGAGGTGGAGCCTCTCCTCCTCTTGTTCAACCTCTTCACCCTCCTCGGCACCATTGGCAGCCGCGACAACTTTGT
CGTCGATCAGCCGGCTACTGGCCTCGACAAGGCCGTCATCGCCTTCTCCATCATCAGCGAGATCGTCACCGGCAAGGTTG
CCCTCACGCAGCTCAACATCGAGACCAGCATCCCCGTCACTGAGATTGAGTCGCTCGTCCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14593.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis