Browse Element(s) Details


OsAffx.14697.1.S1_at

Description tigr:9633.m01302
TID=OsAffx.14697.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY133550 At5g40780K1B16_3
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1482010/11lysine and histidine specific transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14800OsAffx.4338.1.S1_at8/115+8386618..8395281Cycloartenol synthase, putative
LOC_Os05g14810NANA5+8397335..8399231retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g14820OsAffx.14697.1.S1_at10/115+8406710..8408708lysine and histidine specific transporter, putative, expressed
LOC_Os05g14820Os.51403.1.S1_at1/115+8406710..8408708lysine and histidine specific transporter, putative, expressed
LOC_Os05g14830NANA5+8409835..8410271hypothetical protein
LOC_Os05g14840OsAffx.4339.1.S1_at9/115+8413389..8414614hypothetical protein
LOC_Os05g14850Os.52782.1.S1_at1/115+8417761..8418776hypothetical protein
LOC_Os05g14860OsAffx.14699.1.S1_at11/115+8419737..8425022Ubiquitin ligase SINAT3, putative, expressed
LOC_Os05g14860OsAffx.14699.1.S1_s_at11/115+8419737..8425022Ubiquitin ligase SINAT3, putative, expressed
LOC_Os05g14870OsAffx.4340.1.S1_at11/115+8426921..8427440hypothetical protein
LOC_Os05g14880Os.53594.1.S1_at11/115+8429808..8431098expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0005279molecular_functionamino acid-polyamine transporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14697.1.S1_at--1120--9471Chr05:8407825..8407849 (25 bp)
TCTGCTACTTCACCGTGGCGTTCGG
LOC_Os05g14820
OsAffx.14697.1.S1_at--154--2631Chr05:8407718..8407742 (25 bp)
AACCTGATGGTGGTCGTGCACGTCA
LOC_Os05g14820
OsAffx.14697.1.S1_at--681--7231Chr05:8407150..8407171 (22 bp)
GTCGCATTGACCATGTTCATCGGGA
LOC_Os05g14820
OsAffx.14697.1.S1_at--748--10511Chr05:8407093..8407117 (25 bp)
TTCTTCGGAGGTTTCGGATTCGCGC
LOC_Os05g14820
OsAffx.14697.1.S1_at--1084--6571NONE
GATTCGCGCCAACAACTTACTTCAT
NONE
OsAffx.14697.1.S1_at--194--551Chr05:8406948..8406972 (25 bp)
ATCCCCTGCATCATATGGCTCATAA
LOC_Os05g14820
OsAffx.14697.1.S1_at--143--10111Chr05:8406935..8406959 (25 bp)
TATGGCTCATAATGCGCAAGCCCGC
LOC_Os05g14820
OsAffx.14697.1.S1_at--691--4391Chr05:8406912..8406936 (25 bp)
GCCAAGTACAGCCTCTCATGGTTAA
LOC_Os05g14820
OsAffx.14697.1.S1_at--116--5471Chr05:8406791..8406910 (25 bp)
GAACTGGTGTTTCATCATCATCGGA
LOC_Os05g14820
OsAffx.14697.1.S1_at--261--8211Chr05:8406769..8406793 (25 bp)
GGAATGCTGCTCATGCTGGTTTCAC
LOC_Os05g14820
OsAffx.14697.1.S1_at--453--7871Chr05:8406752..8406776 (25 bp)
GGTTTCACCCATCGGAGGATTACGG
LOC_Os05g14820
Target Sequence 
TCTGCTACTTCACCGTGGCGTTCGGCGGCTACCACGCGTTCGGCAACGCCGTGGCGCCCAACGTGCTCATCTCGCTGGAG
AAGCCGCGGTGGCTGGTGGCGGCGGCGAACCTGATGGTGGTCGTGCACGTCATCGGCGCGTACCAGGTGTACGCCATGCC
GGTGTTCGACATGATCGAGACGGTGCTCGCCAAGAAGCTCCACCTCCGCCCCGGCCTGCCGCTCCGCGTCACCGCCCGCT
CCGCCTACGTCGCATTGACCATGTTCATCGGGATAACCTTCCCCTTCTTCGACGGCCTCCTCGGCTTCTTCGGAGGTTTC
GGATTCGCGCCAACAACTTACTTCATCCCCTGCATCATATGGCTCATAATGCGCAAGCCCGCCAAGTACAGCCTCTCATG
GTTAATGAACTGGTGTTTCATCATCATCGGAATGCTGCTCATGCTGGTTTCACCCATCGGAGGATTACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14697.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis