Browse Element(s) Details


OsAffx.14869.1.S1_at

Description tigr:9633.m02663
TID=OsAffx.14869.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Phospholipase D. Active site motif, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2905011/11Phospholipase D p1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g29040OsAffx.4467.1.S1_at11/115+16946972..16947567hypothetical protein
LOC_Os05g29050OsAffx.14869.1.S1_at11/115+16970907..16981612Phospholipase D p1, putative, expressed
LOC_Os05g29060NANA5+16986707..16987686transposon protein, putative, Mutator sub-class
LOC_Os05g29070NANA5+16988094..16990738transposon protein, putative, Mutator sub-class
LOC_Os05g29080NANA5+16993234..16993662hypothetical protein
LOC_Os05g29090NANA5+16999223..17002800transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g29100OsAffx.14870.1.S1_at11/115+17005880..17008942hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0012501biological_processprogrammed cell death
GO:0005886cellular_componentplasma membrane
GO:0015630cellular_componentmicrotubule cytoskeleton
GO:0004630molecular_functionphospholipase D activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14869.1.S1_at--602--6311Chr05:16972442..16972466 (25 bp)
GATGACCGCATCACATTGATTGGAT
LOC_Os05g29050
OsAffx.14869.1.S1_at--727--6051Chr05:16972186..16972209 (24 bp)
GAGATTGCCGTGGTCATTGAAGATA
LOC_Os05g29050
OsAffx.14869.1.S1_at--624--8191Chr05:16972116..16972140 (25 bp)
GGAAGTTTTCTCTAAGCCTACGTCT
LOC_Os05g29050
OsAffx.14869.1.S1_at--33--10111Chr05:16971582..16971606 (25 bp)
TATGGACCCTATCGATGACTCAACT
LOC_Os05g29050
OsAffx.14869.1.S1_at--841--2251Chr05:16971552..16971576 (25 bp)
AAATATCTGGATGGCCACTGCTAAG
LOC_Os05g29050
OsAffx.14869.1.S1_at--527--1311Chr05:16971248..16971272 (25 bp)
AGATGTCTTCTCATGTGTACCTAAT
LOC_Os05g29050
OsAffx.14869.1.S1_at--549--10291Chr05:16971145..16971243 (25 bp)
TTATCCATTCAAGGGCCCAATTTCG
LOC_Os05g29050
OsAffx.14869.1.S1_at--144--3431Chr05:16971119..16971143 (25 bp)
CAGAGCTTTGCTCACTGCAGGGATA
LOC_Os05g29050
OsAffx.14869.1.S1_at--1022--8491Chr05:16971049..16971073 (25 bp)
TGGAAACCTACCAGGACGGCGATCT
LOC_Os05g29050
OsAffx.14869.1.S1_at--448--5731Chr05:16971035..16971059 (25 bp)
GACGGCGATCTCAAGGGTACGGACC
LOC_Os05g29050
OsAffx.14869.1.S1_at--670--6831Chr05:16970975..16970999 (25 bp)
GTTTCTTTCCCGTTGGATTTCATGT
LOC_Os05g29050
Target Sequence 
GATGACCGCATCACATTGATTGGATCAGCTAACATAAATGATAGAAGCTTGCTTGGATCAAGAGATTCTGAGATTGCCGT
GGTCATTGAAGATAAAGAAGTTGTTAGTTCCAAAATGAATGGAAAACCTTGGGAAGCTGGGAAGTTTTCTCTAAGCCTAC
GTCTCTCTCTCTGGGCAGAGCACCTTGGCCTTCATCGAGGAGAGGTCAGCCATATTATGGACCCTATCGATGACTCAACT
TTCAAAAATATCTGGATGGCCACTGCTAAGACAAATACCATGATTTACCAAGATGTCTTCTCATGTGTACCTAATGATCT
TATCCATTCAAGGGCCCAATTTCGGCAGAGCTTTGCTCACTGCAGGGATAAAATCGGTCACAATACAATCGATTTGGGGG
TTGCCCAAGAGAAGCTGGAAACCTACCAGGACGGCGATCTCAAGGGTACGGACCCTATAGAAAGATTGCAGATGATCAAA
GGTCACCTTGTTTCTTTCCCGTTGGATTTCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14869.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis