Browse Element(s) Details


OsAffx.15120.1.S1_at

Description tigr:9633.m04323
TID=OsAffx.15120.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4609011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46040Os.18094.2.S1_a_at11/115+26621897..26624551Protein phosphatase 2C ABI2, putative, expressed
LOC_Os05g46050Os.54851.1.S1_at11/115+26631240..26632756F-box domain containing protein, expressed
LOC_Os05g46060OsAffx.4632.2.S1_at11/115+26633993..26635219F-box domain containing protein
LOC_Os05g46070OsAffx.1407.1.S1_at3/115+26637834..26638620hAT dimerisation domain-containing protein, putative
LOC_Os05g46070Os.55414.1.S1_at2/115+26637834..26638620hAT dimerisation domain-containing protein, putative
LOC_Os05g46079NANA5+26646611..26647236NA
LOC_Os05g46090OsAffx.15120.1.S1_at11/115+26649139..26652880Leucine Rich Repeat family protein
LOC_Os05g46100OsAffx.27336.1.S1_at11/115+26654579..26654863hypothetical protein
LOC_Os05g46110Os.1924.1.S1_at1/115+26656128..26659454retrotransposon protein, putative, unclassified
LOC_Os05g46120NANA5+26666357..26667110transposon protein, putative, Mutator sub-class
LOC_Os05g46130OsAffx.29757.3.S1_x_at9/115+26669587..26676907transposon protein, putative, Mutator sub-class
LOC_Os05g46130OsAffx.29757.1.S1_x_at7/115+26669587..26676907transposon protein, putative, Mutator sub-class
LOC_Os05g46130OsAffx.29757.4.S1_x_at6/115+26669587..26676907transposon protein, putative, Mutator sub-class
LOC_Os05g46130OsAffx.29757.3.S1_at4/115+26669587..26676907transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15120.1.S1_at--370--8871Chr05:26649796..26649820 (25 bp)
TGATGGTAGTGATGAGGCCTTCCCC
LOC_Os05g46090
OsAffx.15120.1.S1_at--650--10252Chr09:19340012..19340032 (21 bp)
TTTGTCTTTGGTTTCAGTTCTCCAC
NONE
OsAffx.15120.1.S1_at--428--3352Chr09:19339986..19340007 (22 bp)
CACGCATCTCCTGTTTTGGATACTT
NONE
OsAffx.15120.1.S1_at--1053--6471Chr05:26649627..26649741 (25 bp)
GATACTTTCATCTTGTCTGTGCAGC
LOC_Os05g46090
OsAffx.15120.1.S1_at--718--4992Chr09:19339854..19339878 (25 bp)
GCATGATTCAGTTTCCGGTGACACA
NONE
OsAffx.15120.1.S1_at--1118--711Chr05:26649510..26649534 (25 bp)
ATGATCATTGGATTCTGCTCCGCGA
LOC_Os05g46090
OsAffx.15120.1.S1_at--148--6291Chr05:26649380..26649404 (25 bp)
GATGTTGTACGACTACTATCCGCAA
LOC_Os05g46090
OsAffx.15120.1.S1_at--988--3911Chr05:26649352..26649376 (25 bp)
CGGCTCATGCTACCCACTAAGAAGG
LOC_Os05g46090
OsAffx.15120.1.S1_at--390--6071Chr05:26649252..26649276 (25 bp)
GAGTTAACTATTCGTGAGCCTTGTA
LOC_Os05g46090
OsAffx.15120.1.S1_at--156--8931Chr05:26649238..26649262 (25 bp)
TGAGCCTTGTACGTGGTGCCATGAT
LOC_Os05g46090
OsAffx.15120.1.S1_at--716--10711Chr05:26649212..26649236 (25 bp)
TTGAACGCTTAGACGCCTTAGAAAA
LOC_Os05g46090
Target Sequence 
TGATGGTAGTGATGAGGCCTTCCCCCCAGAATACGATTATTTGTCTTTGGTTTCAGTTCTCCACGCATCTCCTGTTTTGG
ATACTTTCATCTTGTCTGTGCAGCAGGGAGGAATGAAGCATGATTCAGTTTCCGGTGACACAACCACAAATTTGAGAACT
ATGCCTGGACACAAGCATGAGAGGCTGAAGGAGGTGATGATCATTGGATTCTGCTCCGCGACGAGCATGGTTGAGCTAAC
ATGTCATATACTCGAGAACACAACATCGCTGGAAACTATTACATTGGATGCTGTATGTGATGTGCATGATCTTGAAAATA
TTGGGAGATGTTGTACGACTACTATCCGCAAAACCGGCTCATGCTACCCACTAAGAAGGGAGATGATCTTGGAAGCCCAT
AGAGGGGTCATGGCAATTGAAAGATACATCAGGGGGAAAGTTCCATCTATTGTTGAGTTAACTATTCGTGAGCCTTGTAC
GTGGTGCCATGATCTTGAACGCTTAGACGCCTTAGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15120.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis