Browse Element(s) Details


OsAffx.15123.2.S1_at

Description tigr:9633.m04329
TID=OsAffx.15123.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4615011/11F-box domain containing protein
LOC_Os05g461801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46120NANA5+26666357..26667110transposon protein, putative, Mutator sub-class
LOC_Os05g46130OsAffx.29757.3.S1_x_at9/115+26669587..26676907transposon protein, putative, Mutator sub-class
LOC_Os05g46130OsAffx.29757.1.S1_x_at7/115+26669587..26676907transposon protein, putative, Mutator sub-class
LOC_Os05g46130OsAffx.29757.4.S1_x_at6/115+26669587..26676907transposon protein, putative, Mutator sub-class
LOC_Os05g46130OsAffx.29757.3.S1_at4/115+26669587..26676907transposon protein, putative, Mutator sub-class
LOC_Os05g46140Os.25019.1.S1_at2/115+26678738..26681596expressed protein
LOC_Os05g46140Os.49727.1.S1_at1/115+26678738..26681596expressed protein
LOC_Os05g46150OsAffx.15123.2.S1_at11/115+26685194..26686429F-box domain containing protein
LOC_Os05g46160OsAffx.15123.3.S1_at11/115+26688690..26689901F-box domain containing protein
LOC_Os05g46170OsAffx.11109.1.S1_at4/115+26693587..26694873hypothetical protein
LOC_Os05g46180OsAffx.15123.2.S1_at1/115+26697243..26698535hypothetical protein
LOC_Os05g46190NANA5+26708783..26710129expressed protein
LOC_Os05g46200Os.14570.1.S1_at11/115+26711104..26718236Glycosyl hydrolases family 35 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15123.2.S1_at--1156--9371Chr05:26685831..26685855 (25 bp)
TCGATGAGGACTTCCTTTTCCTCAC
LOC_Os05g46150
OsAffx.15123.2.S1_at--1013--2071Chr05:26685867..26685891 (25 bp)
ACATTCGTGTGTGCCCAGAGCTAAC
LOC_Os05g46150
OsAffx.15123.2.S1_at--67--3071Chr05:26685892..26685916 (25 bp)
AATCTTCCATGAATATCCCGAGCGG
LOC_Os05g46150
OsAffx.15123.2.S1_at--249--5891Chr05:26685911..26685935 (25 bp)
GAGCGGATACTGTGGCGCTTCCAGC
LOC_Os05g46150
OsAffx.15123.2.S1_at--803--9652Chr05:26686014..26686038 (25 bp)
TCAGACTAGCTAGCGGGCGTTGTCA
LOC_Os05g46150
OsAffx.15123.2.S1_at--658--6631Chr05:26686032..26686056 (25 bp)
GTTGTCAGAATTTGCCGACGTCGGA
LOC_Os05g46150
OsAffx.15123.2.S1_at--20--6071Chr05:26686055..26686079 (25 bp)
GAGTTCCGGGTGTTTCAGAAAGAGA
LOC_Os05g46150
OsAffx.15123.2.S1_at--391--5371Chr05:26686109..26686133 (25 bp)
GAAGACGCGTTTCAGTTTCATGAGT
LOC_Os05g46150
OsAffx.15123.2.S1_at--640--671Chr05:26686251..26686275 (25 bp)
ATGACCGGAGCTTCGTCGAGGCCGC
LOC_Os05g46150
OsAffx.15123.2.S1_at--459--7211Chr05:26686265..26686289 (25 bp)
GTCGAGGCCGCCATTGGTGATGCAC
LOC_Os05g46150
OsAffx.15123.2.S1_at--651--2572Chr05:26686316..26686340 (25 bp)
AACGGCAAATGGTCGAAATCACCTT
LOC_Os05g46150
Target Sequence 
TCGATGAGGACTTCCTTTTCCTCACCGAAGAGGAACACATTCGTGTGTGCCCAGAGCTAACAATCTTCCATGAATATCCC
GAGCGGATACTGTGGCGCTTCCAGCGCCGGCGCCGTGGCGAGGAGGAGGAGCAGGTCCTTGCTCGCTACCTCGTGGAATC
CCGAGGGAGTCTGCTCATGGTGGTCAGACTAGCTAGCGGGCGTTGTCAGAATTTGCCGACGTCGGAGTTCCGGGTGTTTC
AGAAAGAGAAGTTCAGCAATGGCGAAGAAGAAGAAGAAGAAGACGCGTTTCAGTTTCATGAGTACTACTGGAGCGAGCTG
GACAAGCTCGAAGGCCGGATGCTGTTCGTCGGACGAGGCTGCTCCAGATCCTACGAGGCGGCCGATGGGCACGCCGGCAT
GGAGGGCGTCTACTTCTTGGATGACCGGAGCTTCGTCGAGGCCGCCATTGGTGATGCACCCAAGCTGCCGTACCGCTGCA
GCGACAACGGCAAATGGTCGAAATCACCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15123.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis