Browse Element(s) Details


OsAffx.15166.1.S1_at

Description tigr:9633.m04645
TID=OsAffx.15166.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=CTP synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4952011/11CTP synthase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49490Os.54816.1.S1_at6/115+28293453..28295669hypothetical protein
LOC_Os05g49500OsAffx.15167.1.S1_at10/115+28301306..28303614hypothetical protein
LOC_Os05g49500Os.54816.1.S1_at3/115+28301306..28303614hypothetical protein
LOC_Os05g49510OsAffx.27383.1.S1_at11/115+28305649..28306860hypothetical protein
LOC_Os05g49520OsAffx.15166.1.S1_at11/115+28308917..28314652CTP synthase family protein
LOC_Os05g49530OsAffx.27384.1.S1_at11/115+28317436..28318558F-box domain containing protein
LOC_Os05g49540OsAffx.19542.3.S1_x_at6/115+28320418..28333928retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g49540OsAffx.9949.1.S1_at1/115+28320418..28333928retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g49550OsAffx.19542.3.S1_x_at4/115+28334753..28340721retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g49550OsAffx.9949.1.S1_at1/115+28334753..28340721retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0003883molecular_functionCTP synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15166.1.S1_at--866--9031Chr05:28313014..28313038 (25 bp)
TGCACGCCATGTTTTGAAATTGCCT
LOC_Os05g49520
OsAffx.15166.1.S1_at--769--71Chr05:28313032..28313056 (25 bp)
ATTGCCTGATGCTAACAGCACAGAA
LOC_Os05g49520
OsAffx.15166.1.S1_at--694--2571Chr05:28313068..28313092 (25 bp)
AACGGAGAATCCATGTGTGACCATA
LOC_Os05g49520
OsAffx.15166.1.S1_at--633--791Chr05:28313080..28313101 (22 bp)
ATGTGTGACCATAATGCCAGAGTGC
LOC_Os05g49520
OsAffx.15166.1.S1_at--927--1951Chr05:28314475..28314499 (25 bp)
ACTGGATGATGCGTTGCAAGATGCG
LOC_Os05g49520
OsAffx.15166.1.S1_at--684--691Chr05:28314510..28314534 (25 bp)
ATGAGCCACAACAGAATCGGCGTGG
LOC_Os05g49520
OsAffx.15166.1.S1_at--241--9571Chr05:28314544..28314568 (25 bp)
TCTTGCTGCTAGTGATCTTGGAGAC
LOC_Os05g49520
OsAffx.15166.1.S1_at--580--431Chr05:28314558..28314582 (25 bp)
ATCTTGGAGACGGAACCTGCCGCAG
LOC_Os05g49520
OsAffx.15166.1.S1_at--102--1771Chr05:28314572..28314596 (25 bp)
ACCTGCCGCAGCAAACGGCAAGTGA
LOC_Os05g49520
OsAffx.15166.1.S1_at--1048--2371Chr05:28314584..28314608 (25 bp)
AAACGGCAAGTGAAGGCGTGCTCTA
LOC_Os05g49520
OsAffx.15166.1.S1_at--351--2951Chr05:28314596..28314620 (25 bp)
AAGGCGTGCTCTAATTCGAATGACA
LOC_Os05g49520
Target Sequence 
TGCACGCCATGTTTTGAAATTGCCTGATGCTAACAGCACAGAATTTGATGCCAAAACGGAGAATCCATGTGTGACCATAA
TGCCAGAGTGCTCCAACGAAGGAAAGGGTGGTACCATGCGACGTGGATCAAAGAGGATATTTTTCAAGGTTGCAGGTAGC
AAGTCTGCCAAGCTATATGGTAGCGTCAGCCACATAGATGAGAGGTTTCGGCACAGATACCAGGTAAATCCCAATATGGT
GCAATTATTTGAGAACAGTGGGCTTCAGGTTGTAGGCACAGACAAGACCGGAGAAAGGGTGCAGATCGTCGAAATACCCA
ATCATCGATTTTTCGTTGGTGTTCAATTTCACCCCGAGTTTAAGTCGAGACCTTCGAAACCTTCTGCACTTTTTGTCGGA
CTAATCGCTGCATCGTGTGGGCAACTGGATGATGCGTTGCAAGATGCGGCTTGTAACCATGAGCCACAACAGAATCGGCG
TGGAGAGAAGCGTCTTGCTGCTAGTGATCTTGGAGACGGAACCTGCCGCAGCAAACGGCAAGTGAAGGCGTGCTCTAATT
CGAATGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15166.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis