Browse Element(s) Details


OsAffx.15167.1.S1_at

Description tigr:9633.m04643
TID=OsAffx.15167.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4950010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49480Os.52814.1.S1_at11/115+28277330..28278658transcription factor, putative, expressed
LOC_Os05g49490Os.54816.1.S1_at6/115+28293453..28295669hypothetical protein
LOC_Os05g49500OsAffx.15167.1.S1_at10/115+28301306..28303614hypothetical protein
LOC_Os05g49500Os.54816.1.S1_at3/115+28301306..28303614hypothetical protein
LOC_Os05g49510OsAffx.27383.1.S1_at11/115+28305649..28306860hypothetical protein
LOC_Os05g49520OsAffx.15166.1.S1_at11/115+28308917..28314652CTP synthase family protein
LOC_Os05g49530OsAffx.27384.1.S1_at11/115+28317436..28318558F-box domain containing protein
LOC_Os05g49540OsAffx.19542.3.S1_x_at6/115+28320418..28333928retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g49540OsAffx.9949.1.S1_at1/115+28320418..28333928retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15167.1.S1_at--351--451Chr05:28302588..28302612 (25 bp)
ATCTACTTCTTCGACGACCAGGATT
LOC_Os05g49500
OsAffx.15167.1.S1_at--1005--2991Chr05:28302534..28302558 (25 bp)
AATGAGTACACCTGCTTCGACAATG
LOC_Os05g49500
OsAffx.15167.1.S1_at--1148--8391Chr05:28302494..28302518 (25 bp)
GGCCGCCTCTAATGGAAACGTACTG
LOC_Os05g49500
OsAffx.15167.1.S1_at--285--8511Chr05:28302482..28302506 (25 bp)
TGGAAACGTACTGCTTCTGGCCGGA
LOC_Os05g49500
OsAffx.15167.1.S1_at--303--9511NONE
TCTCCCTGGAGAATACTTGTTTGAT
NONE
OsAffx.15167.1.S1_at--68--9791Chr05:28301544..28301568 (25 bp)
TAAGTCGGTGCTTTCATCTTTTGCT
LOC_Os05g49500
OsAffx.15167.1.S1_at--994--7371Chr05:28301428..28301452 (25 bp)
GTGATCCCGGTGACCGTCAAAGCAA
LOC_Os05g49500
OsAffx.15167.1.S1_at--1087--1411Chr05:28301408..28301432 (25 bp)
AGCAAAAGCGGTTGTAGCGGGCCCA
LOC_Os05g49500
OsAffx.15167.1.S1_at--14--5231Chr05:28301390..28301414 (25 bp)
GGGCCCAGGAAAGCTGTTTACCCAG
LOC_Os05g49500
OsAffx.15167.1.S1_at--362--5291Chr05:28301366..28301390 (25 bp)
GAATGGCAACCTGAATGCGGCTAAA
LOC_Os05g49500
OsAffx.15167.1.S1_at--974--9812Chr08:27518560..27518675 (24 bp)
TAAAATTCATCAGGCCTCTGCTTCA
NONE
Target Sequence 
ATCTACTTCTTCGACGACCAGGATTCATACAGTGTATCCAGTATTGCTGAGGATAATGAGTACACCTGCTTCGACAATGG
GAAGTGGTCCGCCGGGCCGCCTCTAATGGAAACGTACTGCTTCTGGCCGGATCAAGTCAACTCGAACTACTCTTCACCGG
TTTGGCTTCTCCCTGGAGAATACTTGTTTGATGTAAGTCGGTGCTTTCATCTTTTGCTGTTCCACGGCCATGGCCTTCGC
CCTGATGGTCATGTTCGGGGCCTCGCCGGCGGAGGACAGGGGCCGCGGACCGGCGCACGCCTAACCCCCGTGATCCCGGT
GACCGTCAAAGCAAAAGCGGTTGTAGCGGGCCCAGGAAAGCTGTTTACCCAGAATGGCAACCTGAATGCGGCTAAAATTC
ATCAGGCCTCTGCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15167.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis