Browse Element(s) Details


Os.52814.1.S1_at

Description gb:AK069714.1
DB_XREF= gi:32979738
TID=Os.52814.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52814 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023030K16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030K16, full insert sequence.
FL= gb:AK069714.1 gb:AK069416.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4948011/11transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49420Os.19553.1.S1_at11/115+28251474..28256334G-box binding factor 1, putative, expressed
LOC_Os05g49430Os.33445.1.A1_at11/115+28259281..28261831Possible apospory-associated protein C, putative, expressed
LOC_Os05g49440Os.2250.1.S1_a_at11/115+28263471..28264618secreted protein, putative, expressed
LOC_Os05g49450OsAffx.15165.1.S1_at11/115+28265893..28267203F-box domain containing protein
LOC_Os05g49460OsAffx.15166.2.S1_at11/115+28268587..28273535CTP synthase family protein
LOC_Os05g49470Os.51690.1.S1_at11/115+28273744..28275805expressed protein
LOC_Os05g49480Os.52814.1.S1_at11/115+28277330..28278658transcription factor, putative, expressed
LOC_Os05g49490Os.54816.1.S1_at6/115+28293453..28295669hypothetical protein
LOC_Os05g49500OsAffx.15167.1.S1_at10/115+28301306..28303614hypothetical protein
LOC_Os05g49500Os.54816.1.S1_at3/115+28301306..28303614hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52814.1.S1_at--690--711Chr05:28277851..28277875 (25 bp)
ATGATCTCAGGCACTCCAAATCGGA
LOC_Os05g49480
Os.52814.1.S1_at--123--3291Chr05:28277867..28277891 (25 bp)
CAAATCGGAGATGAGTGCCGTCCAG
LOC_Os05g49480
Os.52814.1.S1_at--328--1431Chr05:28277890..28277914 (25 bp)
AGAAGAAGGCTTTACAACGTGTCGG
LOC_Os05g49480
Os.52814.1.S1_at--1040--7611Chr05:28278182..28278206 (25 bp)
GGGAACAACTTCCATTATATTGTGC
LOC_Os05g49480
Os.52814.1.S1_at--311--231Chr05:28278198..28278222 (25 bp)
ATATTGTGCAAAGCCTTCAGTCCCA
LOC_Os05g49480
Os.52814.1.S1_at--717--2351Chr05:28278382..28278406 (25 bp)
AAAGCCCGGACTATTGGTGAGCAAT
LOC_Os05g49480
Os.52814.1.S1_at--707--5691Chr05:28278439..28278463 (25 bp)
GACTTTTGGTGTAAACTCCGATAAT
LOC_Os05g49480
Os.52814.1.S1_at--92--8211Chr05:28278530..28278554 (25 bp)
GGAAGGGTCAATTGTTCTGTTCATT
LOC_Os05g49480
Os.52814.1.S1_at--46--6731Chr05:28278543..28278567 (25 bp)
GTTCTGTTCATTTGTTCGGTGTTCT
LOC_Os05g49480
Os.52814.1.S1_at--639--2631Chr05:28278589..28278613 (25 bp)
AACCTTCAGTAACTATTTCCTATAG
LOC_Os05g49480
Os.52814.1.S1_at--1050--10651Chr05:28278605..28278629 (25 bp)
TTCCTATAGGTTCTTGTCGTGTCAG
LOC_Os05g49480
Target Sequence 
ATGATCTCAGGCACTCCAAATCGGAGATGAGTGCCGTCCAGAAGAAGGCTTTACAACGTGTCGGGGCAAGCAGGACTTCT
GGTGTAACACAAAATGACCTGTGCAAAAGTTTTGGCATGGAAGGGAACAACTTCCATTATATTGTGCAAAGCCTTCAGTC
CCAGAAGTTAATTGTTAGACGATCAACTATTATAAAGTTTAAAGGCAATGGAGCTGAGAAGGAAGATGCTTCACAGAATA
AACGAGTAACCAATACCAACTCATTGTATCTCACTAGATATGCCAAAGACTGTATGAATTCACACCAGAGAATTGAGATT
ATAAAGCCCGGACTATTGGTGAGCAATGAAGAGACCAACNTAGATGATCTACAAGATGGGACTTTTGGTGTAAACTCCGA
TAATGATGTATCTATCCATGATTATCTTCCAGCAATGAAAGCCATTTGTGACAAACTCGAAGAAGCNAGTGGAAGGGTCA
ATTGTTCTGTTCATTTGTTCGGTGTTCTTTTTCATTTTTCCAGTTTTCTAACCTTCAGTAACTATTTCCTATAGGTTCTT
GTCGTGTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52814.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis