Browse Element(s) Details


OsAffx.15166.2.S1_at

Description tigr:9633.m04638
TID=OsAffx.15166.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=CTP synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4946011/11CTP synthase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49400OsAffx.15164.1.S1_at11/115+28244147..28245511F-box domain containing protein
LOC_Os05g49410Os.49345.1.S1_at10/115+28246150..28247425expressed protein
LOC_Os05g49420Os.19553.1.S1_at11/115+28251474..28256334G-box binding factor 1, putative, expressed
LOC_Os05g49430Os.33445.1.A1_at11/115+28259281..28261831Possible apospory-associated protein C, putative, expressed
LOC_Os05g49440Os.2250.1.S1_a_at11/115+28263471..28264618secreted protein, putative, expressed
LOC_Os05g49450OsAffx.15165.1.S1_at11/115+28265893..28267203F-box domain containing protein
LOC_Os05g49460OsAffx.15166.2.S1_at11/115+28268587..28273535CTP synthase family protein
LOC_Os05g49470Os.51690.1.S1_at11/115+28273744..28275805expressed protein
LOC_Os05g49480Os.52814.1.S1_at11/115+28277330..28278658transcription factor, putative, expressed
LOC_Os05g49490Os.54816.1.S1_at6/115+28293453..28295669hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003883molecular_functionCTP synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15166.2.S1_at--528--10871Chr05:28269857..28269881 (25 bp)
TTGGCTGCCAAGCACGCACGCGAAA
LOC_Os05g49460
OsAffx.15166.2.S1_at--1059--4791Chr05:28269795..28269819 (25 bp)
GCTCGCCGTGGTAGAATTCGCATGC
LOC_Os05g49460
OsAffx.15166.2.S1_at--758--4491Chr05:28269791..28269815 (25 bp)
GCCGTGGTAGAATTCGCATGCCATG
LOC_Os05g49460
OsAffx.15166.2.S1_at--10--8592Chr05:28269787..28269811 (25 bp)
TGGTAGAATTCGCATGCCATGTTTT
LOC_Os05g49460
OsAffx.15166.2.S1_at--852--4111Chr05:28269777..28269801 (25 bp)
CGCATGCCATGTTTTGAAACTGCCT
LOC_Os05g49460
OsAffx.15166.2.S1_at--1018--1971Chr05:28269759..28269783 (25 bp)
ACTGCCTGATGCGAACAGCACAGAG
LOC_Os05g49460
OsAffx.15166.2.S1_at--522--11Chr05:28269723..28269747 (25 bp)
AACGGAGAACCCATGTGTAATTATA
LOC_Os05g49460
OsAffx.15166.2.S1_at--434--5451Chr05:28269717..28269741 (25 bp)
GAACCCATGTGTAATTATAATGCCA
LOC_Os05g49460
OsAffx.15166.2.S1_at--1060--771Chr05:28269714..28269735 (22 bp)
ATGTGTAATTATAATGCCAGAGTGC
LOC_Os05g49460
OsAffx.15166.2.S1_at--598--691Chr05:28268624..28268648 (25 bp)
ATGAGCCACAGCAGAATCAGCGTGC
LOC_Os05g49460
OsAffx.15166.2.S1_at--493--2151Chr05:28268617..28268641 (25 bp)
ACAGCAGAATCAGCGTGCAGAGAAG
LOC_Os05g49460
Target Sequence 
TTGGCTGCCAAGCACGCACGCGAAAACGATGTCCCTTTCCTGGGCATATGCCTTGGCATGCAGCTCGCCGTGGTAGAATT
CGCATGCCATGTTTTGAAACTGCCTGATGCGAACAGCACAGAGTTTGATGCCAAAACGGAGAACCCATGTGTAATTATAA
TGCCAGAGTGCTCCAACGAAGGAAAGGGTGGTACCATGCGGCGTGGATCAAAGAGGACATTTTTCAAGGTTGCAAATAGC
AAGTCTGCCAAGCTATATGGTAGCGTCAACCACATAGATGAGAGGTTTCGGCACAGATACCAGGTAAATCCCAATGTGGT
GCAATTATTTGAGAACAATGGGCTTCAGGTTGTAGGCACAGACAAGACCGGAGAAATTGTGCAGATCGTCGAAATACCCA
ATCATCGATTTTTCGTTGGCGTTCAATTTCACCCCGAGTTTATGTCGAGACCTTCGAAACCTTCCGCACTTTTTGTCGGA
CTAATCGCTGCATCGTGTGGGCAACTGGATGGTGTGCTGCAAGATGCGGCTTGTAACCATGAGCCACAGCAGAATCAGCG
TGCAGAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15166.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis