Browse Element(s) Details


Os.2250.1.S1_a_at

Description gb:AF049892.1
DB_XREF= gi:4105682
GEN=Ose731
TID=Os.2250.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2250 (NCBI UniGene Cluster)
DEF=Oryza sativa embryo-specific (Ose731) mRNA, complete cds.
PROD=unknown
FL= gb:AF049892.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4944011/11secreted protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49390OsAffx.27381.1.S1_at11/115+28236893..28242625hypothetical protein
LOC_Os05g49400OsAffx.15164.1.S1_at11/115+28244147..28245511F-box domain containing protein
LOC_Os05g49410Os.49345.1.S1_at10/115+28246150..28247425expressed protein
LOC_Os05g49420Os.19553.1.S1_at11/115+28251474..28256334G-box binding factor 1, putative, expressed
LOC_Os05g49430Os.33445.1.A1_at11/115+28259281..28261831Possible apospory-associated protein C, putative, expressed
LOC_Os05g49440Os.2250.1.S1_a_at11/115+28263471..28264618secreted protein, putative, expressed
LOC_Os05g49450OsAffx.15165.1.S1_at11/115+28265893..28267203F-box domain containing protein
LOC_Os05g49460OsAffx.15166.2.S1_at11/115+28268587..28273535CTP synthase family protein
LOC_Os05g49470Os.51690.1.S1_at11/115+28273744..28275805expressed protein
LOC_Os05g49480Os.52814.1.S1_at11/115+28277330..28278658transcription factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2250.1.S1_a_at--826--1331Chr05:28263921..28263945 (25 bp)
AGAGGGTGTGCAAGACCTACGGCAA
LOC_Os05g49440
Os.2250.1.S1_a_at--648--5871Chr05:28264207..28264231 (25 bp)
GAGCGTACATGAGCGGCCCGGATCA
LOC_Os05g49440
Os.2250.1.S1_a_at--917--2871Chr05:28264263..28264287 (25 bp)
AAGGGCTTGAAGACCGATCTCCGGG
LOC_Os05g49440
Os.2250.1.S1_a_at--307--7691Chr05:28264327..28264351 (25 bp)
GGGTTTTCACCTGATGACGACACAC
LOC_Os05g49440
Os.2250.1.S1_a_at--213--691Chr05:28264354..28264378 (25 bp)
ATGAGCGATTGAGCGACGACTCGAC
LOC_Os05g49440
Os.2250.1.S1_a_at--1118--10571Chr05:28264390..28264414 (25 bp)
TTCTGCCTGACGACGGTTAAGTAGT
LOC_Os05g49440
Os.2250.1.S1_a_at--582--4931Chr05:28264421..28264445 (25 bp)
GCATATCACGGGATGCTCCGATTAG
LOC_Os05g49440
Os.2250.1.S1_a_at--294--4791Chr05:28264435..28264459 (25 bp)
GCTCCGATTAGCTTGTGTACCTTCA
LOC_Os05g49440
Os.2250.1.S1_a_at--185--8771Chr05:28264469..28264493 (25 bp)
TGTATCGATCTGTTGTCCCTGAGCG
LOC_Os05g49440
Os.2250.1.S1_a_at--432--1451Chr05:28264505..28264529 (25 bp)
AGAAGCACACTAGAGTATCCGACTG
LOC_Os05g49440
Os.2250.1.S1_a_at--1039--4031Chr05:28264524..28264548 (25 bp)
CGACTGTAGTACCTGTAGCCTCTTT
LOC_Os05g49440
Target Sequence 
AGAGGGTGTGCAAGACCTACGGCAAGACCATCCACTTCTGGCAGGTCGACCGCGGCGACGCGCTCCCGCTCGGCCTGCCC
CAGATCATGATGGCTCTCACCCGCGACGGACAGCTCCGCCAAGAACTCGCCAAATGTGTGGAGGAGAAGTTCAGCGTGTC
GTTCGACAAGGAGAGGGAGAACCGAGCGTACATGAGCGGCCCGGATCACGGCATCCACCCGCTGGCGAATGCCGCCGGCA
AGGGCTTGAAGACCGATCTCCGGGAGGTTGATCTGCCGGCGATGACTACGGCGCACGCCGGGAGGGTTTTCACCTGATGA
CGACACACTGATGAGCGATTGAGCGACGACTCGACGGCCTTGCTGCTTCTGCCTGACGACGGTTAAGTAGTATGCTAGCA
TATCACGGGATGCTCCGATTAGCTTGTGTACCTTCACTCGTGTTATGTATCGATCTGTTGTCCCTGAGCGTTTGTTCTGA
AAGAAGCACACTAGAGTATCCGACTGTAGTACCTGTAGCCTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2250.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis