Browse Element(s) Details


OsAffx.15311.1.S1_at

Description tigr:9634.m00786
TID=OsAffx.15311.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=histidine kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0845011/11ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08440Os.19406.1.S1_at11/116+4136249..4141662Two-component response regulator ARR12, putative, expressed
LOC_Os06g08450OsAffx.15311.1.S1_at11/116+4141852..4149977ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein
LOC_Os06g08460NANA6+4160338..4161798Exo70 exocyst complex subunit family protein
LOC_Os06g08470Os.15792.1.S1_at11/116+4161948..4166025expressed protein
LOC_Os06g08480Os.10925.1.S1_at11/116+4166231..4182563Type III restriction enzyme, res subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009736biological_processcytokinin mediated signaling
GO:0016020cellular_componentmembrane
GO:0000156molecular_functiontwo-component response regulator activity
GO:0004673molecular_functionprotein histidine kinase activity
GO:0009884molecular_functioncytokinin receptor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15311.1.S1_at--1054--6631Chr06:4142611..4142635 (25 bp)
GTTGTACTCTCTTCTTATGACTCTA
LOC_Os06g08450
OsAffx.15311.1.S1_at--1134--9771Chr06:4142588..4142612 (25 bp)
TAAGAGATGTCCAGTCCTCGCCTAT
LOC_Os06g08450
OsAffx.15311.1.S1_at--1124--5111Chr06:4142563..4142587 (25 bp)
GCACAGATCATCTCTTGTTGGCCAT
LOC_Os06g08450
OsAffx.15311.1.S1_at--1054--5351Chr06:4142412..4142436 (25 bp)
GAAGACACTTTGGTGCTACAAACTA
LOC_Os06g08450
OsAffx.15311.1.S1_at--217--2771Chr06:4142279..4142303 (25 bp)
AAGAGCATAGTGTACCCTTGCCCTA
LOC_Os06g08450
OsAffx.15311.1.S1_at--639--9631Chr06:4142057..4142267 (25 bp)
TCATGGATTGCCAGATGCCGCGAAT
LOC_Os06g08450
OsAffx.15311.1.S1_at--712--10111Chr06:4142025..4142049 (25 bp)
TATGAAGCAACTAGGCGCATCCGCG
LOC_Os06g08450
OsAffx.15311.1.S1_at--334--1391Chr06:4141996..4142020 (25 bp)
AGAAAGCCGCTACGGAATTCGCACT
LOC_Os06g08450
OsAffx.15311.1.S1_at--1011--91Chr06:4141980..4142004 (25 bp)
ATTCGCACTCCGATCATTGCATTGA
LOC_Os06g08450
OsAffx.15311.1.S1_at--728--10731Chr06:4141964..4141988 (25 bp)
TTGCATTGACTGCTCATTCTATGGA
LOC_Os06g08450
OsAffx.15311.1.S1_at--360--7971Chr06:4141906..4141930 (25 bp)
GGATCTACACATGACAAAGCCGATA
LOC_Os06g08450
Target Sequence 
GTTGTACTCTCTTCTTATGACTCTAAGAGATGTCCAGTCCTCGCCTATGCACAGATCATCTCTTGTTGGCCATGAGAATT
ATGTCACTAGGCATCAAGATTCTGCAAATATTGTTGCATTAGCTGAAGTTGGACGCTTGGATCAGGGGCTAAAAACTGAA
GAAGATAGGCCATTGGATGGCATGCATGTGTTGCTGGTTGAAGACACTTTGGTGCTACAAACTATTCAGAGAAAGATGTT
GAACCAACTAGGAGCAATAGTTGAATTGGCAGGGGATGGAGCTAAGGCTGTGGATATGTTCAGAGATGCTATTGAGAGAG
CAAGTGTTTCAGAAGAGCATAGTGTACCCTTGCCCTATGATGTCATCTTCATGGATTGCCAGATGCCGCGAATGGATGGC
TATGAAGCAACTAGGCGCATCCGCGAGGAAGAAAGCCGCTACGGAATTCGCACTCCGATCATTGCATTGACTGCTCATTC
TATGGAGGATGATCTTCAGAAGGCTATTGATGTTGGGATGGATCTACACATGACAAAGCCGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15311.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis