Browse Element(s) Details


OsAffx.15409.1.S1_at

Description tigr:9634.m01340
TID=OsAffx.15409.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1349011/11SAM dependent carboxyl methyltransferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13460Os.52964.1.S1_at11/116+7405038..7407610Jasmonate O-methyltransferase, putative, expressed
LOC_Os06g13470OsAffx.27612.1.S1_at11/116+7416745..7421148SAM dependent carboxyl methyltransferase family protein
LOC_Os06g13480OsAffx.27613.1.S1_at11/116+7422690..7423046hypothetical protein
LOC_Os06g13490OsAffx.15409.1.S1_at11/116+7428731..7432792SAM dependent carboxyl methyltransferase family protein
LOC_Os06g13500NANA6+7438413..7442219retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g13510OsAffx.4829.1.S1_at11/116+7454886..7455585Benzoate carboxyl methyltransferase, putative

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009611biological_processresponse to wounding
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15409.1.S1_at--534--2291Chr06:7429448..7429472 (25 bp)
AAAGGAGCCCCTGAACGAAGGCAAT
LOC_Os06g13490
OsAffx.15409.1.S1_at--179--4111Chr06:7429433..7429457 (25 bp)
CGAAGGCAATATTTACATCTCCAAG
LOC_Os06g13490
OsAffx.15409.1.S1_at--401--2251Chr06:7429352..7429376 (25 bp)
AAATTTCCTCGAGTTGCGCTCAAAC
LOC_Os06g13490
OsAffx.15409.1.S1_at--195--9631Chr06:7429310..7429334 (25 bp)
TCAGATGCTACTCACTTTCCTTGGA
LOC_Os06g13490
OsAffx.15409.1.S1_at--626--6451Chr06:7429105..7429282 (25 bp)
GATCAATGTACTCTTCATGGTCTGA
LOC_Os06g13490
OsAffx.15409.1.S1_at--751--2491Chr06:7429054..7429078 (25 bp)
AACATGCCGGTCTACATGCCGTCAA
LOC_Os06g13490
OsAffx.15409.1.S1_at--459--9611Chr06:7429011..7429035 (25 bp)
TCATCATGCGGAGCAAGCTGTTCAT
LOC_Os06g13490
OsAffx.15409.1.S1_at--1144--1591Chr06:7428996..7429020 (25 bp)
AGCTGTTCATCATCAACCAGATCCA
LOC_Os06g13490
OsAffx.15409.1.S1_at--565--2911Chr06:7428930..7428954 (25 bp)
AAGGAGAGGTTGTGCTCTACCCGGC
LOC_Os06g13490
OsAffx.15409.1.S1_at--618--10751Chr06:7428865..7428889 (25 bp)
TTGAGGCGGTTGTTCACTACCTATT
LOC_Os06g13490
OsAffx.15409.1.S1_at--746--7611Chr06:7428837..7428861 (25 bp)
GGGAATCGGTTCAAGATGTTCTCTT
LOC_Os06g13490
Target Sequence 
AAAGGAGCCCCTGAACGAAGGCAATATTTACATCTCCAAGACTACACCCATATCAACAGTCAAGTTATATCAGGAGTTAT
TTGAGAAGGATTTCTCAAATTTCCTCGAGTTGCGCTCAAACGAACTTATATCTAGTGGTCAGATGCTACTCACTTTCCTT
GGAAGGAAGAACGAAGATGTATCTGATGGAGATCAATGTACTCTTCATGGTCTGATGGAGAAGAAAAAGCTTAACAACTT
CAACATGCCGGTCTACATGCCGTCAACGCATGAAGTGAAAACAATCATCATGCGGAGCAAGCTGTTCATCATCAACCAGA
TCCAACTCTCTGAATCAAACTGGGATCCTTACGACGATGACTTAGAAGGAGAGGTTGTGCTCTACCCGGCGCAAAGCGGG
TTGAATGTCGCGAGGTCTTTGAGGCCAGTGTTGAGGCGGTTGTTCACTACCTATTTTGGGGAATCGGTTCAAGATGTTCT
CTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15409.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis