Browse Element(s) Details


OsAffx.15472.1.S1_at

Description tigr:9634.m01755
TID=OsAffx.15472.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Dof protein 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g174103/11Dof domain, zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17390Os.52645.1.S1_at11/116+10081203..10086095Auxin-independent growth promoter, putative, expressed
LOC_Os06g17390Os.52645.1.S2_at11/116+10081203..10086095Auxin-independent growth promoter, putative, expressed
LOC_Os06g17400OsAffx.27685.1.S1_at11/116+10095791..10096168hypothetical protein
LOC_Os06g17410OsAffx.15472.1.S1_at3/116+10100313..10101516Dof domain, zinc finger family protein, expressed
LOC_Os06g17419OsAffx.9243.1.S1_at1/116+10104233..10104550NA
LOC_Os06g17430OsAffx.27944.1.S1_x_at6/116+10107397..10107660hypothetical protein
LOC_Os06g17430OsAffx.27944.1.S1_at5/116+10107397..10107660hypothetical protein
LOC_Os06g17440Os.12142.1.S1_at11/116+10119999..10123401TMV-MP30 binding protein 2C, putative, expressed
LOC_Os06g17450OsAffx.15474.1.S1_s_at11/116+10125760..10126396expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15472.1.S1_at--907--5391Chr06:10100408..10100432 (25 bp)
GAAGCTTCTGGAATCAATCTCCGGT
LOC_Os06g17410
OsAffx.15472.1.S1_at--694--4911Chr06:10100411..10100435 (25 bp)
GCTTCTGGAATCAATCTCCGGTCGA
LOC_Os06g17410
OsAffx.15472.1.S1_at--786--8511Chr06:10100416..10100440 (25 bp)
TGGAATCAATCTCCGGTCGAGCAAC
LOC_Os06g17410
OsAffx.15472.1.S1_at--993--7651NONE
GGGATTAGTCTCTTACTTGCCACTC
NONE
OsAffx.15472.1.S1_at--607--151NONE
ATTAGTCTCTTACTTGCCACTCAGA
NONE
OsAffx.15472.1.S1_at--591--9531NONE
TCTTACTTGCCACTCAGACTGATTG
NONE
OsAffx.15472.1.S1_at--491--10691NONE
TTGCCACTCAGACTGATTGCGTACT
NONE
OsAffx.15472.1.S1_at--603--3311NONE
CACTCAGACTGATTGCGTACTTTCT
NONE
OsAffx.15472.1.S1_at--1109--4631NONE
GCGTACTTTCTGCTTGTTTGACTGT
NONE
OsAffx.15472.1.S1_at--221--2051NONE
ACTTTCTGCTTGTTTGACTGTATCT
NONE
OsAffx.15472.1.S1_at--124--10611NONE
TTCTGCTTGTTTGACTGTATCTGGG
NONE
Target Sequence 
GAAGCTTCTGGAATCAATCTCCGGTCGAGCAACATGCAGGAGTTCCACCCCGTCCCCGGGCTGGCCGGCCGGCTGTTCGG
CGGCGCGGCGGCGGCGGCGGCTGTGGCGGCGGTGGAGGAGGTGCGGTGCCCGCGGTGCGACTCGTCGAACACCAAGTTCT
GCTACTACAACAACTACAACCTCTCCCAGCCCCGCCACTTCTGCAAGGCGTGCCGCCGCTACTGGACCAAGGGCGGCCTC
CTCCGCAACGTCCCCGTCGGCGGCGGCTGCCTCAAGCCCAAACGCCCGGCGCCGCCAGAGTTTTTCTTTCTTCACCGGGG
GGGGGGGATTAGTCTCTTACTTGCCACTCAGACTGATTGCGTACTTTCTGCTTGTTTGACTGTATCTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15472.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis