Browse Element(s) Details


OsAffx.15546.1.S1_at

Description tigr:9634.m02158
TID=OsAffx.15546.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2202011/11Cytochrome P450 71C4, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22000Os.57201.1.S1_at11/116+12738038..12738486expressed protein
LOC_Os06g22010OsAffx.32229.1.S1_x_at11/116+12743082..12746423NAD, putative
LOC_Os06g22010OsAffx.23041.1.S1_at10/116+12743082..12746423NAD, putative
LOC_Os06g22010OsAffx.26050.13.S1_x_at8/116+12743082..12746423NAD, putative
LOC_Os06g22010OsAffx.9230.1.S1_x_at1/116+12743082..12746423NAD, putative
LOC_Os06g22020OsAffx.15546.1.S1_at11/116+12750746..12752287Cytochrome P450 71C4, putative
LOC_Os06g22030Os.16446.1.S1_at11/116+12757543..12762701AT hook motif family protein, expressed
LOC_Os06g22030Os.40082.1.A1_x_at2/116+12757543..12762701AT hook motif family protein, expressed
LOC_Os06g22040OsAffx.17778.2.S1_at11/116+12772279..12773486hypothetical protein
LOC_Os06g22040OsAffx.6537.1.S1_at2/116+12772279..12773486hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15546.1.S1_at--962--8131Chr06:12751687..12751711 (25 bp)
GGACACGTCATTCATCGAGCTAGAA
LOC_Os06g22020
OsAffx.15546.1.S1_at--977--3091Chr06:12751710..12751734 (25 bp)
AATACGCCATGGCTGAGCTGATGCA
LOC_Os06g22020
OsAffx.15546.1.S1_at--558--1611Chr06:12751725..12751749 (25 bp)
AGCTGATGCAGAAGCCCCATGTAAT
LOC_Os06g22020
OsAffx.15546.1.S1_at--174--5131Chr06:12751813..12751837 (25 bp)
GCAACTAGGTTGTATGCCCTACCTA
LOC_Os06g22020
OsAffx.15546.1.S1_at--248--9771Chr06:12751887..12751911 (25 bp)
TAATGCCGCATCTTTCCATATCTGA
LOC_Os06g22020
OsAffx.15546.1.S1_at--750--311Chr06:12751934..12751958 (25 bp)
ATACCCTCTGGTACTCGTGTCATAG
LOC_Os06g22020
OsAffx.15546.1.S1_at--1139--731Chr06:12751966..12751990 (25 bp)
ATGGGCTTTGGCCAGGGACTCAAAC
LOC_Os06g22020
OsAffx.15546.1.S1_at--1133--6731Chr06:12752011..12752035 (25 bp)
GTTCATACCGGAGCGATTCATCGTT
LOC_Os06g22020
OsAffx.15546.1.S1_at--45--5511Chr06:12752059..12752083 (25 bp)
GAACAATTTCCATTTCTTGCCATTC
LOC_Os06g22020
OsAffx.15546.1.S1_at--985--2231Chr06:12752149..12752173 (25 bp)
AAATTTGGTGTACCGCTTTGACTGG
LOC_Os06g22020
OsAffx.15546.1.S1_at--648--5911Chr06:12752174..12752198 (25 bp)
GAGCTACCAGCAGATCAGGCGGCGA
LOC_Os06g22020
Target Sequence 
GGACACGTCATTCATCGAGCTAGAATACGCCATGGCTGAGCTGATGCAGAAGCCCCATGTAATGGGAAAGCTGCAGGCCG
AGGTGAGAAGAGTGATGCCAAAGGGGCAAGACATAGTTACTGAAGAGCAACTAGGTTGTATGCCCTACCTAAAGGCGGTC
ATCAAGGAGACACTTCGGCTACACCCTCCAGCACCACTTCTAATGCCGCATCTTTCCATATCTGATTGTAATATCAATGG
CTACACAATACCCTCTGGTACTCGTGTCATAGTCAATGTATGGGCTTTGGCCAGGGACTCAAACTATTGGGAGAACGCCG
ACGAGTTCATACCGGAGCGATTCATCGTTAACACATTAGGTGACTACAACGGGAACAATTTCCATTTCTTGCCATTCGGG
AGCGGGCGGAGGATCTGCCCAGGTATAAACTTTGCAATTGCCACCATCGAGATCATGCTAGCAAATTTGGTGTACCGCTT
TGACTGGGAGCTACCAGCAGATCAGGCGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15546.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis