Browse Element(s) Details


OsAffx.15592.1.S1_at

Description tigr:9634.m02383
TID=OsAffx.15592.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2412011/11hypothetical protein
LOC_Os04g276302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g173802/11hypothetical protein
LOC_Os03g327491/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g24080NANA6+14092462..14093030retrotransposon protein, putative, LINE subclass
LOC_Os06g24090NANA6+14094694..14100013retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24100NANA6+14102956..14105799Transposable element protein, putative, Transposase_28
LOC_Os06g24110Os.45212.1.S1_x_at1/116+14106232..14111228retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24110Os.31497.2.S1_x_at1/116+14106232..14111228retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24120OsAffx.15592.1.S1_at11/116+14111613..14112140hypothetical protein
LOC_Os06g24130OsAffx.15593.1.S1_at6/116+14115597..14117702hypothetical protein
LOC_Os06g24139NANA6+14124892..14126618NA
LOC_Os06g24150OsAffx.18711.1.S1_at2/116+14132477..14134327retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15592.1.S1_at--331--4511Chr06:14112077..14112101 (25 bp)
GCCGAAGTCGGAGGAGCACCATCCA
LOC_Os06g24120
OsAffx.15592.1.S1_at--315--5331Chr06:14112074..14112098 (25 bp)
GAAGTCGGAGGAGCACCATCCACTT
LOC_Os06g24120
OsAffx.15592.1.S1_at--524--9431Chr06:14112070..14112094 (25 bp)
TCGGAGGAGCACCATCCACTTCGGT
LOC_Os06g24120
OsAffx.15592.1.S1_at--505--972Chr06:14112066..14112090 (25 bp)
AGGAGCACCATCCACTTCGGTGCCG
LOC_Os06g24120
OsAffx.15592.1.S1_at--995--10611Chr06:14112051..14112075 (25 bp)
TTCGGTGCCGGCACCATTGCTGCTA
LOC_Os06g24120
OsAffx.15592.1.S1_at--1122--8891Chr06:14112006..14112030 (25 bp)
TGAGCAGGCGCCGAATGTGGACGAC
LOC_Os06g24120
OsAffx.15592.1.S1_at--782--771Chr06:14111992..14112016 (25 bp)
ATGTGGACGACGTGGCGAAGGCAGC
LOC_Os06g24120
OsAffx.15592.1.S1_at--1043--6352Chr06:14111719..14111743 (25 bp)
GATCCAAGGTCGCTTCAGCACCAAT
LOC_Os06g24120
OsAffx.15592.1.S1_at--498--6872Chr04:16145493..16145515 (23 bp)
GTATTCGACAGGATATGTCCCACCT
LOC_Os04g27630
OsAffx.15592.1.S1_at--820--10633Chr04:16145496..16145752 (25 bp)
TTCGACAGGATATGTCCCACCTCAA
LOC_Os04g27630
OsAffx.15592.1.S1_at--1074--1132Chr06:14111644..14111668 (25 bp)
AGTCCCAGCCCAGTCTGCCACAAGT
LOC_Os06g24120
Target Sequence 
GCCGAAGTCGGAGGAGCACCATCCACTTCGGTGCCGGCACCATTGCTGCTACCTTCGGCCCCCGCCACCTCTGAGCAGGC
GCCGAATGTGGACGACGTGGCGAAGGCAGCCGCAGTGGCAAGGGCACTCCAGACCAGGGCGGAGGTCCTTTCGACAAGTC
AGCTGCTGGTGCCCCAGGCCGTTCCCTCACAGCCAGCAGCGGCCCAAGCGGCGCTCCCTGCCATGCAAGTCCAAGTCAAC
TCCGACCCTGAAACACAAGCCGAAGCCGATATGGAAGCCATGCGGCAGAACATGGCACGACTCCAAGACATGCTTCGCCA
AATGCAAGAACAGCAGCAAGCGTACGAAGCGGCAAGGCGATCCAAGGTCGCTTCAGCACCAATCCTCCAGTATTCGACAG
GATATGTCCCACCTCAAGTCTATCCGCAAGTGCAGTCCCAGCCCAGTCTGCCACAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15592.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis