Browse Element(s) Details


OsAffx.15593.1.S1_at

Description tigr:9634.m02384
TID=OsAffx.15593.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g241306/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g24080NANA6+14092462..14093030retrotransposon protein, putative, LINE subclass
LOC_Os06g24090NANA6+14094694..14100013retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24100NANA6+14102956..14105799Transposable element protein, putative, Transposase_28
LOC_Os06g24110Os.45212.1.S1_x_at1/116+14106232..14111228retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24110Os.31497.2.S1_x_at1/116+14106232..14111228retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24120OsAffx.15592.1.S1_at11/116+14111613..14112140hypothetical protein
LOC_Os06g24130OsAffx.15593.1.S1_at6/116+14115597..14117702hypothetical protein
LOC_Os06g24139NANA6+14124892..14126618NA
LOC_Os06g24150OsAffx.18711.1.S1_at2/116+14132477..14134327retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24160Os.14491.2.S1_x_at5/116+14137265..14144575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g24160Os.47463.1.S1_x_at4/116+14137265..14144575transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15593.1.S1_at--379--1431NONE
AGAACCGCCGCGCTAAGATTATTTA
NONE
OsAffx.15593.1.S1_at--1076--9771NONE
TAAGATTATTTAGCGGCAACCCGAA
NONE
OsAffx.15593.1.S1_at--996--7631NONE
GGGAGCTCGGGAAACACATTATTTA
NONE
OsAffx.15593.1.S1_at--507--2271Chr06:14116217..14116241 (25 bp)
AAATCGGGGCGTTGCATGCGGCCAC
LOC_Os06g24130
OsAffx.15593.1.S1_at--685--4611Chr06:14116123..14116147 (25 bp)
GCGAGCGGTGGCCACGAGAAATGCG
LOC_Os06g24130
OsAffx.15593.1.S1_at--591--5891Chr06:14116072..14116428 (25 bp)
GAGCTCCCCGAGAGGATGGGACGGC
LOC_Os06g24130
OsAffx.15593.1.S1_at--814--9051Chr06:14116003..14116027 (25 bp)
TGCTTCTCGGGTTAGGGTCAAGGAC
LOC_Os06g24130
OsAffx.15593.1.S1_at--291--6111NONE
GAGGGCCGGTAGGACCCAGGAGCGA
NONE
OsAffx.15593.1.S1_at--916--7571NONE
GGGCGGCTTGATGTCGTGGAGCTGG
NONE
OsAffx.15593.1.S1_at--742--4571Chr06:14115837..14115861 (25 bp)
GCGCAGCTCAAGGTGGCCGGGAACG
LOC_Os06g24130
OsAffx.15593.1.S1_at--894--8151Chr06:14115818..14115842 (25 bp)
GGAACGGCCACGAGAGGCGGCTGGA
LOC_Os06g24130
Target Sequence 
AGAACCGCCGCGCTAAGATTATTTAGCGGCAACCCGAAAAGGGACCGGGGAGCTCGGGAAACACATTATTTAATGATTTT
TAATCCCAAACGAAAATCGGGGCGTTGCATGCGGCCACATGGGCGGCTTCAGGACGGCCGGCCGGCGGGGAGCGGCAGCG
ACGCCTGGGGCCAAGAGGCCACCGGCGGCGAGCGGTGGCCACGAGAAATGCGGCGGAGGGCGACGGGAAGGGAGAGGGGA
GCTCCCCGAGAGGATGGGACGGCGAGGCGAAGACGGGAAGGTGGCCGGCGACGAGGATTGGCGGCGGTGCTTCTCGGGTT
AGGGTCAAGGACGGCGCTCCGGCGACTCGCGACCATGGCGGAGGTGCGGCCGAGGGCCGGTAGGACCCAGGAGCGAGGGG
AGATGGCGGTTCCAGCGGCGGGAAAAATGGTGGCTGAGGGGCGGCTTGATGTCGTGGAGCTGGGGGAGGGAACGGCGCAG
CTCAAGGTGGCCGGGAACGGCCACGAGAGGCGGCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15593.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis