Browse Element(s) Details


OsAffx.15595.1.S1_at

Description tigr:9634.m02407
TID=OsAffx.15595.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2433011/11retrotransposon, putative, centromere-specific
LOC_Os10g365901/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g24270NANA6+14202787..14205497retrotransposon protein, putative, unclassified
LOC_Os06g24280NANA6+14207863..14208417hypothetical protein
LOC_Os06g24290OsAffx.15594.1.S1_at11/116+14209394..14209921Pathogenesis-related protein PRB1-3 precursor, putative
LOC_Os06g24300OsAffx.27803.1.S1_at11/116+14211158..14212559hypothetical protein
LOC_Os06g24310NANA6+14216111..14220221retrotransposon protein, putative, unclassified
LOC_Os06g24320OsAffx.22896.1.S1_x_at2/116+14222405..14224508transposon protein, putative, unclassified
LOC_Os06g24330OsAffx.15595.1.S1_at11/116+14228142..14231602retrotransposon, putative, centromere-specific
LOC_Os06g24350NANA6+14243984..14250645retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24360OsAffx.19542.3.S1_x_at10/116+14255163..14259385retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15595.1.S1_at--1097--2113Chr06:14228192..14228216 (25 bp)
ACAGGCGCCCGTCCAATCGGACGTG
LOC_Os06g24330
OsAffx.15595.1.S1_at--247--7213Chr06:14228248..14228358 (25 bp)
GTCCGATTGACGTGGCCTGGGTCCC
LOC_Os06g24330
OsAffx.15595.1.S1_at--275--4511Chr06:14228461..14228485 (25 bp)
GCCGTTTCTGCGACTCGTGAGGTGC
LOC_Os06g24330
OsAffx.15595.1.S1_at--946--2251Chr06:14229692..14229716 (25 bp)
AAATCTACTCTATCTTATTTTGAAG
LOC_Os06g24330
OsAffx.15595.1.S1_at--379--5511Chr06:14229716..14229740 (25 bp)
GAAAATTATGATCCTCGTGCTAACA
LOC_Os06g24330
OsAffx.15595.1.S1_at--775--10431Chr06:14229721..14229745 (25 bp)
TTATGATCCTCGTGCTAACATTGAT
LOC_Os06g24330
OsAffx.15595.1.S1_at--995--2912Chr06:14229773..14229797 (25 bp)
AAGGAGCATGACTTGTCTGAGAAAC
LOC_Os06g24330
OsAffx.15595.1.S1_at--1092--5651Chr06:14230259..14230283 (25 bp)
GACATGAAAGAGCTGCCGTTCCCAT
LOC_Os06g24330
OsAffx.15595.1.S1_at--1114--9171Chr06:14230272..14230296 (25 bp)
TGCCGTTCCCATTATTCACACTCAA
LOC_Os06g24330
OsAffx.15595.1.S1_at--131--6251Chr06:14230301..14230325 (25 bp)
GATGGATCTCCATCATCAGAAGAGA
LOC_Os06g24330
OsAffx.15595.1.S1_at--407--33Chr06:14230543..14230567 (25 bp)
ATTGGTAATTCTTACTGCGCTGATT
LOC_Os06g24330
Target Sequence 
ACAGGCGCCCGTCCAATCGGACGTGACCGGCAACAGGCCGGTCACAGACTGGTCACGTCCGATTGACGTGGCCTGGGTCC
CCTCCCTGCTCGCTCCCCCCACCACATGGCAGTTGGGCGAGGGCCTCGGGGCGAGGCAGCACGAGGGCCCGAGGGGCACG
ACGTGGCACCCCGAGGCCCCCCGGCCGTTTCTGCGACTCGTGAGGTGCGGGAGTAGGGCCAGGCTGTGGAGCCACGCGGC
TGGATGGGAAGGTAAGATCAAATCTACTCTATCTTATTTTGAAGAAAATTATGATCCTCGTGCTAACATTGATTGGGAGC
TAGTGGTTGATAGAGAATTTAAGGAGCATGACTTGTCTGAGAAACATATGGAAGTGCATAATCATGAAAATGAGGAGAGT
GACATGAAAGAGCTGCCGTTCCCATTATTCACACTCAAATTTGATGGATCTCCATCATCAGAAGAGAGAATCACATGTAA
TCTACATGGTGCTGCAATTAATCAAGTGAATGAACATGCTATTCCTATTGGTAATTCTTACTGCGCTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15595.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis