Browse Element(s) Details


OsAffx.15594.1.S1_at

Description tigr:9634.m02402
TID=OsAffx.15594.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to pathogenesis-related protein 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2429011/11Pathogenesis-related protein PRB1-3 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g24240OsAffx.27802.1.S1_at11/116+14195595..14195963hypothetical protein
LOC_Os06g24250Os.55780.1.S1_at5/116+14196704..14197850hypothetical protein
LOC_Os06g24260NANA6+14200365..14200856hypothetical protein
LOC_Os06g24270NANA6+14202787..14205497retrotransposon protein, putative, unclassified
LOC_Os06g24280NANA6+14207863..14208417hypothetical protein
LOC_Os06g24290OsAffx.15594.1.S1_at11/116+14209394..14209921Pathogenesis-related protein PRB1-3 precursor, putative
LOC_Os06g24300OsAffx.27803.1.S1_at11/116+14211158..14212559hypothetical protein
LOC_Os06g24310NANA6+14216111..14220221retrotransposon protein, putative, unclassified
LOC_Os06g24320OsAffx.22896.1.S1_x_at2/116+14222405..14224508transposon protein, putative, unclassified
LOC_Os06g24330OsAffx.15595.1.S1_at11/116+14228142..14231602retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009627biological_processsystemic acquired resistance
GO:0009723biological_processresponse to ethylene stimulus
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0005576cellular_componentextracellular region
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15594.1.S1_at--335--271Chr06:14209424..14209448 (25 bp)
ATAGTAATCTTGTGTCTCGTCGCCC
LOC_Os06g24290
OsAffx.15594.1.S1_at--1107--10051Chr06:14209425..14209449 (25 bp)
TAGTAATCTTGTGTCTCGTCGCCCT
LOC_Os06g24290
OsAffx.15594.1.S1_at--750--2191Chr06:14209451..14209475 (25 bp)
ACAAACCTTGCGCAAGCCCAGAACT
LOC_Os06g24290
OsAffx.15594.1.S1_at--564--2371Chr06:14209453..14209477 (25 bp)
AAACCTTGCGCAAGCCCAGAACTCG
LOC_Os06g24290
OsAffx.15594.1.S1_at--469--4571Chr06:14209512..14209536 (25 bp)
GCGCGGAGGTCGGTGTCGGCAAGCT
LOC_Os06g24290
OsAffx.15594.1.S1_at--844--1031Chr06:14209518..14209542 (25 bp)
AGGTCGGTGTCGGCAAGCTCTCCTG
LOC_Os06g24290
OsAffx.15594.1.S1_at--216--2691Chr06:14209532..14209556 (25 bp)
AAGCTCTCCTGGGACGGCACCCTCG
LOC_Os06g24290
OsAffx.15594.1.S1_at--4--8391Chr06:14209577..14209601 (25 bp)
GGCGAGAAGAGGTCCCACGACTGCA
LOC_Os06g24290
OsAffx.15594.1.S1_at--750--1451Chr06:14209581..14209605 (25 bp)
AGAAGAGGTCCCACGACTGCACGCT
LOC_Os06g24290
OsAffx.15594.1.S1_at--310--6151Chr06:14209585..14209609 (25 bp)
GAGGTCCCACGACTGCACGCTCAAG
LOC_Os06g24290
OsAffx.15594.1.S1_at--769--9711Chr06:14209605..14209629 (25 bp)
TCAAGCACTCCCGTGGGCCGTATGG
LOC_Os06g24290
Target Sequence 
ATAGTAATCTTGTGTCTCGTCGCCCTCACAAACCTTGCGCAAGCCCAGAACTCGCCGCACGACTTCCTGCAACCCCACAA
CGCCGCGCGCGCGGAGGTCGGTGTCGGCAAGCTCTCCTGGGACGGCACCCTCGCCGCGTACGCGCGGAGGTACGGCGAGA
AGAGGTCCCACGACTGCACGCTCAAGCACTCCCGTGGGCCGTATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15594.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis