Browse Element(s) Details


OsAffx.27802.1.S1_at

Description tigr:9634.m02397
TID=OsAffx.27802.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2424011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g24200OsAffx.3348.1.S1_at1/116+14173769..14176528transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g24200OsAffx.22387.1.S1_at1/116+14173769..14176528transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g24210NANA6+14176864..14177187hypothetical protein
LOC_Os06g24220NANA6+14178632..14179426transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g24230NANA6+14179721..14182231transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g24240OsAffx.27802.1.S1_at11/116+14195595..14195963hypothetical protein
LOC_Os06g24250Os.55780.1.S1_at5/116+14196704..14197850hypothetical protein
LOC_Os06g24260NANA6+14200365..14200856hypothetical protein
LOC_Os06g24270NANA6+14202787..14205497retrotransposon protein, putative, unclassified
LOC_Os06g24280NANA6+14207863..14208417hypothetical protein
LOC_Os06g24290OsAffx.15594.1.S1_at11/116+14209394..14209921Pathogenesis-related protein PRB1-3 precursor, putative
LOC_Os06g24300OsAffx.27803.1.S1_at11/116+14211158..14212559hypothetical protein
LOC_Os06g24310NANA6+14216111..14220221retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27802.1.S1_at--1043--5711Chr06:14195909..14195933 (25 bp)
GACTCGGAGATGATCGTGGGCAGTG
LOC_Os06g24240
OsAffx.27802.1.S1_at--279--1091Chr06:14195888..14195912 (25 bp)
AGTGGTGTGGCCGTGAACGACGAGC
LOC_Os06g24240
OsAffx.27802.1.S1_at--279--8591Chr06:14195825..14195849 (25 bp)
TGGTCTTCGAGATGGGCGGCGATTA
LOC_Os06g24240
OsAffx.27802.1.S1_at--1157--4691Chr06:14195810..14195834 (25 bp)
GCGGCGATTAGTGGCGGCTCGAGAT
LOC_Os06g24240
OsAffx.27802.1.S1_at--877--7951Chr06:14195783..14195807 (25 bp)
GGATCGGCGCCGACCAAACGCGGTG
LOC_Os06g24240
OsAffx.27802.1.S1_at--338--2351Chr06:14195768..14195792 (25 bp)
AAACGCGGTGGTGGTCCCGGTGATG
LOC_Os06g24240
OsAffx.27802.1.S1_at--583--7591Chr06:14195686..14195710 (25 bp)
GGGCAGAGGAATCGGCTACCCCTTC
LOC_Os06g24240
OsAffx.27802.1.S1_at--1044--3031Chr06:14195677..14195701 (25 bp)
AATCGGCTACCCCTTCATGTGGAGG
LOC_Os06g24240
OsAffx.27802.1.S1_at--137--8311Chr06:14195673..14195697 (25 bp)
GGCTACCCCTTCATGTGGAGGCGAA
LOC_Os06g24240
OsAffx.27802.1.S1_at--811--5251Chr06:14195647..14195671 (25 bp)
GAATCGGCGATGAATGGCGGCATAA
LOC_Os06g24240
OsAffx.27802.1.S1_at--1033--3511Chr06:14195627..14195651 (25 bp)
CATAAGCGCGGTGACGTTTGCGAGA
LOC_Os06g24240
Target Sequence 
GACTCGGAGATGATCGTGGGCAGTGGTGTGGCCGTGAACGACGAGCGGAGGTCGACGGCGAGGAAGCAGGATCAGGCGGT
GATGTGGTCTTCGAGATGGGCGGCGATTAGTGGCGGCTCGAGATGGGGATCGGCGCCGACCAAACGCGGTGGTGGTCCCG
GTGATGTGAGAGGGGGAATCAGTGACGACGAGCTGGGGACAGGGGTTCGGCGACCTGGATTTGGGGCAGAGGAATCGGCT
ACCCCTTCATGTGGAGGCGAAGGAATCGGCGATGAATGGCGGCATAAGCGCGGTGACGTTTGCGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27802.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis