Browse Element(s) Details


OsAffx.15700.1.S1_at

Description tigr:9634.m03037
TID=OsAffx.15700.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3248010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g32420OsAffx.15698.1.S1_x_at6/116+18860217..18861907hypothetical protein
LOC_Os06g32420OsAffx.15698.1.S1_at3/116+18860217..18861907hypothetical protein
LOC_Os06g32420Os.52049.1.S1_at2/116+18860217..18861907hypothetical protein
LOC_Os06g32430NANA6+18862722..18864903retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g32440NANA6+18866123..18866659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g32450NANA6+18869093..18872170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g32460NANA6+18872479..18873015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g32470NANA6+18876374..18881847retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g32480OsAffx.15700.1.S1_at10/116+18883969..18884330hypothetical protein
LOC_Os06g32490Os.45173.1.S1_x_at4/116+18889330..18895862retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g32500OsAffx.15701.1.S1_x_at10/116+18901859..18906748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g32500OsAffx.514.1.S1_at1/116+18901859..18906748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g32510OsAffx.15702.1.S1_at11/116+18908090..18909462hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15700.1.S1_at--1056--2371Chr06:18884102..18884126 (25 bp)
AACATGGCGGGTTCGTAAAGGATCA
LOC_Os06g32480
OsAffx.15700.1.S1_at--503--8452Chr06:18884106..18884130 (25 bp)
TGGCGGGTTCGTAAAGGATCAAAAG
LOC_Os06g32480
OsAffx.15700.1.S1_at--619--7951Chr06:18884121..18884145 (25 bp)
GGATCAAAAGAGGACAAGACTTCTC
LOC_Os06g32480
OsAffx.15700.1.S1_at--575--5811Chr06:18884132..18884156 (25 bp)
GGACAAGACTTCTCGTAAAGGGACG
LOC_Os06g32480
OsAffx.15700.1.S1_at--1156--5671Chr06:18884138..18884162 (25 bp)
GACTTCTCGTAAAGGGACGCTGGCC
LOC_Os06g32480
OsAffx.15700.1.S1_at--627--10551Chr06:18884141..18884163 (23 bp)
TTCTCGTAAAGGGACGCTGGCCGTG
LOC_Os06g32480
OsAffx.15700.1.S1_at--206--8471Chr06:18884247..18884266 (20 bp)
TGGCCGTGTTACAAGCAACCCAACA
LOC_Os06g32480
OsAffx.15700.1.S1_at--379--4491NONE
GCCGTGTTACAAGCAACCCAACAGT
NONE
OsAffx.15700.1.S1_at--326--10491Chr06:18884250..18884274 (25 bp)
TTACAAGCAACCCAACAGTACCAAC
LOC_Os06g32480
OsAffx.15700.1.S1_at--280--2731Chr06:18884254..18884278 (25 bp)
AAGCAACCCAACAGTACCAACCTAT
LOC_Os06g32480
OsAffx.15700.1.S1_at--302--5151Chr06:18884256..18884280 (25 bp)
GCAACCCAACAGTACCAACCTATGG
LOC_Os06g32480
Target Sequence 
AACATGGCGGGTTCGTAAAGGATCAAAAGAGGACAAGACTTCTCGTAAAGGGACGCTGGCCGTGTTACAAGCAACCCAAC
AGTACCAACCTATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15700.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis