Browse Element(s) Details


OsAffx.514.1.S1_at

Description gb:XM_354221.1
DB_XREF= gi:35189875
GEN=OSJNBb0056I06.28
TID=OsAffx.514.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g325001/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g32470NANA6+18876374..18881847retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g32480OsAffx.15700.1.S1_at10/116+18883969..18884330hypothetical protein
LOC_Os06g32490Os.45173.1.S1_x_at4/116+18889330..18895862retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g32500OsAffx.15701.1.S1_x_at10/116+18901859..18906748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g32500OsAffx.514.1.S1_at1/116+18901859..18906748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g32510OsAffx.15702.1.S1_at11/116+18908090..18909462hypothetical protein
LOC_Os06g32520OsAffx.28610.3.S1_at1/116+18915542..18915904hypothetical protein
LOC_Os06g32520OsAffx.28610.1.S1_x_at1/116+18915542..18915904hypothetical protein
LOC_Os06g32530OsAffx.20725.4.S1_x_at1/116+18923140..18926352transposon protein, putative, unclassified
LOC_Os06g32530OsAffx.20725.3.S1_x_at1/116+18923140..18926352transposon protein, putative, unclassified
LOC_Os06g32530OsAffx.20725.1.S1_x_at1/116+18923140..18926352transposon protein, putative, unclassified
LOC_Os06g32540OsAffx.15703.1.S1_x_at11/116+18927460..18927889hypothetical protein
LOC_Os06g32540OsAffx.15703.1.S1_at11/116+18927460..18927889hypothetical protein
LOC_Os06g32540OsAffx.18934.1.S1_x_at2/116+18927460..18927889hypothetical protein
LOC_Os06g32550Os.23224.1.S1_s_at4/116+18929753..18930413Plant thionin family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.514.1.S1_at--634--9971Chr07:8465987..8466011 (25 bp)
TACCACTTGGCGACCATGGCTTGGG
NONE
OsAffx.514.1.S1_at--319--3611Chr07:8465982..8466006 (25 bp)
CTTGGCGACCATGGCTTGGGCTTTG
NONE
OsAffx.514.1.S1_at--7--10351Chr07:8465872..8465896 (25 bp)
TTTATCCCCAAAATTGTCTTCACTG
NONE
OsAffx.514.1.S1_at--260--3171Chr07:8465861..8465885 (25 bp)
AATTGTCTTCACTGGTGGTCTAATT
NONE
OsAffx.514.1.S1_at--172--9571Chr07:8465856..8465880 (25 bp)
TCTTCACTGGTGGTCTAATTTTGCC
NONE
OsAffx.514.1.S1_at--381--8571Chr07:8465846..8465870 (25 bp)
TGGTCTAATTTTGCCACTAGCCAAA
NONE
OsAffx.514.1.S1_at--849--9191Chr07:8465835..8465859 (25 bp)
TGCCACTAGCCAAAATGGTATTTTT
NONE
OsAffx.514.1.S1_at--85--7873Chr06:18902231..18902255 (25 bp)
GGTATTTTTGCTAGCGGTTGTCTTA
LOC_Os06g32500
OsAffx.514.1.S1_at--606--1631Chr07:8465807..8465831 (25 bp)
AGCGGTTGTCTTAGCATAGCTGCTT
NONE
OsAffx.514.1.S1_at--929--4951Chr07:8465794..8465818 (25 bp)
GCATAGCTGCTTGCGAAACTCAATT
NONE
OsAffx.514.1.S1_at--858--8791Chr07:8465787..8465811 (25 bp)
TGCTTGCGAAACTCAATTTTCACTG
NONE
Target Sequence 
TACCACTTGGCGACCATGGCTTGGGCTTTGGCAGGCGGCGGCCACGGTGAGGTGTTGTGGCAGCAGCCGGCGGTGTTTGC
GGCTGTGGCAGTTGGCAGCACCATTTTGAATTTTTTTTATCCCCAAAATTGTCTTCACTGGTGGTCTAATTTTGCCACTA
GCCAAAATGGTATTTTTGCTAGCGGTTGTCTTAGCATAGCTGCTTGCGAAACTCAATTTTCACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.514.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis