Browse Element(s) Details


OsAffx.15774.1.S1_at

Description tigr:9634.m03448
TID=OsAffx.15774.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=transporter NIC4, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g363308/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36330OsAffx.15774.1.S1_at8/116+21314875..21316581MATE efflux family protein, expressed
LOC_Os06g36340OsAffx.27961.1.S1_at11/116+21325481..21329847hypothetical protein
LOC_Os06g36340OsAffx.27960.1.S1_at11/116+21325481..21329847hypothetical protein
LOC_Os06g36349NANA6+21340454..21341106NA

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15774.1.S1_at--218--4351Chr06:21316420..21316444 (25 bp)
CCACCAGGTCAAGTGTCGTGGCGGC
LOC_Os06g36330
OsAffx.15774.1.S1_at--255--8031Chr06:21316365..21316389 (25 bp)
GGAGGTGTGGTCATGCCGGCGGCTG
LOC_Os06g36330
OsAffx.15774.1.S1_at--68--4571Chr06:21316281..21316305 (25 bp)
GCGCTGATGCTCTACTCGCGGTCGG
LOC_Os06g36330
OsAffx.15774.1.S1_at--1142--8851Chr06:21316277..21316301 (25 bp)
TGATGCTCTACTCGCGGTCGGCGCT
LOC_Os06g36330
OsAffx.15774.1.S1_at--1080--9311NONE
TCGCGTTCGCCAACATTACCGGCTA
NONE
OsAffx.15774.1.S1_at--1159--9491Chr06:21316160..21316184 (25 bp)
TCTCCGGCTTGTCGCTCGGCATGGA
LOC_Os06g36330
OsAffx.15774.1.S1_at--709--10771Chr06:21316156..21316176 (21 bp)
TTGTCGCTCGGCATGGACCCGTTTT
LOC_Os06g36330
OsAffx.15774.1.S1_at--799--8251NONE
GGCATGGACCCGTTTTGTTTCCAGG
NONE
OsAffx.15774.1.S1_at--158--3431NONE
CATGGACCCGTTTTGTTTCCAGGCG
NONE
OsAffx.15774.1.S1_at--131--2791Chr06:21314916..21314940 (25 bp)
AAGAGGCGGCACGTGGCGTTGATCT
LOC_Os06g36330
OsAffx.15774.1.S1_at--902--1911Chr06:21314906..21314930 (25 bp)
ACGTGGCGTTGATCTCGAGCGAGGA
LOC_Os06g36330
Target Sequence 
CCACCAGGTCAAGTGTCGTGGCGGCGACGACGACGGTGGTGGAGGAGGAAGAGGGGGAGGTGTGGTCATGCCGGCGGCTG
GGGAGACGGTGCGGGAGGCGGCGGCGCTGTGCCGGCTGGCGTGCCCGATCGCGCTGACGGCGCTGATGCTCTACTCGCGG
TCGGCGCTGTCGATGCTGTTCCTCGGCTCCCTCGGCGACCTCCCGCTGGCGGCGGGCTCGCTCGCCGTCGCGTTCGCCAA
CATTACCGGCTACTCGGGGCTCTCCGGCTTGTCGCTCGGCATGGACCCGTTTTGTTTCCAGGCGTTCGGCGCGCGGCAGC
CGCGCCTGCTTGGGCTCACCCTCTACCGCTCGGTGTGCTGCGCCGGCCTCATGCTCTGCGTCGTCGGCTCCACCGACTGG
GAGGCGCAGGCGCGCCGCGCCCAGGCGCTGACGTCATCGGCCGCCGTCTCCGGCAAGGCCGACGCGGCGGAGGGAGGCGG
GAGATGGCCGGAGAAAGGGGAGCATCAGGAGTGGGAGAAGAGGCGGCACGTGGCGTTGATCTCGAGCGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15774.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis