Browse Element(s) Details


OsAffx.15926.1.S1_at

Description tigr:9634.m04343
TID=OsAffx.15926.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4482010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44780NANA6+27053294..27053782hypothetical protein
LOC_Os06g44790OsAffx.15929.2.S1_s_at11/116+27057830..27060488hypothetical protein
LOC_Os06g44790OsAffx.15929.2.S1_at7/116+27057830..27060488hypothetical protein
LOC_Os06g44800OsAffx.24518.2.S1_x_at10/116+27063210..27066211hAT family dimerisation domain containing protein, expressed
LOC_Os06g44800OsAffx.19258.2.S1_x_at3/116+27063210..27066211hAT family dimerisation domain containing protein, expressed
LOC_Os06g44810Os.53397.1.S1_at11/116+27067988..27073409expressed protein
LOC_Os06g44820OsAffx.15926.1.S1_at10/116+27074173..27075641hypothetical protein
LOC_Os06g44830NANA6+27081760..27082020hypothetical protein
LOC_Os06g44840OsAffx.15929.2.S1_s_at11/116+27086520..27091920prenyltransferase, UbiA family protein, expressed
LOC_Os06g44840Os.13534.1.S1_at11/116+27086520..27091920prenyltransferase, UbiA family protein, expressed
LOC_Os06g44840OsAffx.15929.1.S1_at10/116+27086520..27091920prenyltransferase, UbiA family protein, expressed
LOC_Os06g44840Os.13534.1.S1_s_at10/116+27086520..27091920prenyltransferase, UbiA family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15926.1.S1_at--198--6171NONE
GAGGATATGTCACCCAGCTTAATGG
NONE
OsAffx.15926.1.S1_at--117--4071Chr06:27075422..27075446 (25 bp)
CGAGTCCTGGGAAGCTGAGAATATA
LOC_Os06g44820
OsAffx.15926.1.S1_at--190--9871Chr06:27075445..27075469 (25 bp)
TACTGAAACAGCTGGAAAGTTCTCA
LOC_Os06g44820
OsAffx.15926.1.S1_at--278--8991Chr06:27075472..27075496 (25 bp)
TGAAGCCTGACGTTGCATCGTATAA
LOC_Os06g44820
OsAffx.15926.1.S1_at--520--4951Chr06:27075486..27075510 (25 bp)
GCATCGTATAACACTGTCGTCGTAA
LOC_Os06g44820
OsAffx.15926.1.S1_at--790--2451Chr06:27075495..27075519 (25 bp)
AACACTGTCGTCGTAAACGGATTCT
LOC_Os06g44820
OsAffx.15926.1.S1_at--57--2391Chr06:27075509..27075533 (25 bp)
AAACGGATTCTGCTTGCGAGGTCTG
LOC_Os06g44820
OsAffx.15926.1.S1_at--232--9151Chr06:27075523..27075547 (25 bp)
TGCGAGGTCTGATCAAAGATGCTCA
LOC_Os06g44820
OsAffx.15926.1.S1_at--1017--991Chr06:27075549..27075573 (25 bp)
AGGATCCTATCCGAGATGATCGCAG
LOC_Os06g44820
OsAffx.15926.1.S1_at--1088--691Chr06:27075564..27075588 (25 bp)
ATGATCGCAGATGGCATTGGCTCCA
LOC_Os06g44820
OsAffx.15926.1.S1_at--110--10831Chr06:27075580..27075604 (25 bp)
TTGGCTCCATGTGCTGTAACTTTAT
LOC_Os06g44820
Target Sequence 
GAGGATATGTCACCCAGCTTAATGGACATGTATGCCAAGTCCAACGAGTCCTGGGAAGCTGAGAATATACTGAAACAGCT
GGAAAGTTCTCAGGTGAAGCCTGACGTTGCATCGTATAACACTGTCGTCGTAAACGGATTCTGCTTGCGAGGTCTGATCA
AAGATGCTCAGAGGATCCTATCCGAGATGATCGCAGATGGCATTGGCTCCATGTGCTGTAACTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15926.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis