Browse Element(s) Details


OsAffx.15938.1.S1_s_at

Description tigr:9634.m04421
TID=OsAffx.15938.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=thioredoxin, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4551011/11Thioredoxin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45490OsAffx.28118.1.S1_at8/116+27504349..27505654hypothetical protein
LOC_Os06g45490OsAffx.25317.1.S1_at1/116+27504349..27505654hypothetical protein
LOC_Os06g45500NANA6+27516402..27522535Copper-transporting ATPase RAN1, putative, expressed
LOC_Os06g45510OsAffx.15938.1.S1_s_at11/116+27529120..27531711Thioredoxin family protein, expressed
LOC_Os06g45520NANA6+27534009..27540107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g45530NANA6+27540440..27543311retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g45540Os.8903.1.S1_at11/116+27556203..27560600zinc-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005829cellular_componentcytosol
GO:0005515molecular_functionprotein binding
GO:0016671molecular_functionoxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15938.1.S1_s_at--611--7271Chr06:27530980..27531002 (23 bp)
GTGCCAACATTCCATTTCTACTACC
LOC_Os06g45510
OsAffx.15938.1.S1_s_at--172--6151Chr06:27531313..27531337 (25 bp)
GAGGTGGCCAGATGTCTCCATGTGC
LOC_Os06g45510
OsAffx.15938.1.S1_s_at--556--5431Chr06:27531370..27531394 (25 bp)
GAACCTTCTGGTTGTTTTTTATCAT
LOC_Os06g45510
OsAffx.15938.1.S1_s_at--952--7011Chr06:27531405..27531429 (25 bp)
GTACATTGCACCTCTTGTTTATTTA
LOC_Os06g45510
OsAffx.15938.1.S1_s_at--198--6331Chr06:27531488..27531512 (25 bp)
GATGCAGCAACCCACTAATTTTGTT
LOC_Os06g45510
OsAffx.15938.1.S1_s_at--522--8991Chr06:27531523..27531547 (25 bp)
TGAAGGAATTCTGGGCCTGTCAGTC
LOC_Os06g45510
OsAffx.15938.1.S1_s_at--1025--7111Chr06:27531541..27531565 (25 bp)
GTCAGTCCATCCATTGTTTTTCTGG
LOC_Os06g45510
OsAffx.15938.1.S1_s_at--846--7551Chr06:27531564..27531588 (25 bp)
GGGCCTTTGTCATAGTTCAACCATT
LOC_Os06g45510
OsAffx.15938.1.S1_s_at--321--2631Chr06:27531582..27531606 (25 bp)
AACCATTCCAGTGTTGGGCTACAAG
LOC_Os06g45510
OsAffx.15938.1.S1_s_at--203--1471Chr06:27531613..27531637 (25 bp)
AGAATTTTTTCTCGCCATCGGCACA
LOC_Os06g45510
OsAffx.15938.1.S1_s_at--774--5431Chr06:27531648..27531672 (25 bp)
GAACCTACGATGTTTGGCGTCTCGA
LOC_Os06g45510
Target Sequence 
GTGCCAACATTCCATTTCTACTACCAAGGTCGGAAGACAGGTGAGGTGGTTGGTGCTAATGCGACAAAACTTGAATCAAC
CATGGAAAGTCTTCACAAGCAACTATAGAAGTTTTGTGGAAGAATATGACCGGGAGGTGGCCAGATGTCTCCATGTGCCT
TCCATCAACGTGTTTGACATTGATATTTCTGAACCTTCTGGTTGTTTTTTATCATGCTGAATTCAGTACATTGCACCTCT
TGTTTATTTAGCACAACTTTGTATAGTCTGCATGTCTAATATCAGAATCAACGCAAACATTCTGTTGGGATGCAGCAACC
CACTAATTTTGTTGGGATAGACGTGAAGGAATTCTGGGCCTGTCAGTCCATCCATTGTTTTTCTGGGCCTTTGTCATAGT
TCAACCATTCCAGTGTTGGGCTACAAGTCCCCCAGAATTTTTTCTCGCCATCGGCACAAGTTAATCATGAACCTACGATG
TTTGGCGTCTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15938.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis