Browse Element(s) Details


OsAffx.15972.1.S1_at

Description tigr:9634.m04619
TID=OsAffx.15972.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4740011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47350Os.9229.3.S1_x_at11/116+28698611..28705482RNA polymerase I specific transcription initiation factor RRN3 family protein, expressed
LOC_Os06g47350Os.9229.2.S1_x_at10/116+28698611..28705482RNA polymerase I specific transcription initiation factor RRN3 family protein, expressed
LOC_Os06g47360OsAffx.15971.1.S1_x_at9/116+28706293..28707351Expansin-related protein 2 precursor, putative, expressed
LOC_Os06g47360OsAffx.15971.1.S1_at9/116+28706293..28707351Expansin-related protein 2 precursor, putative, expressed
LOC_Os06g47370NANA6+28709015..28711976retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g47380Os.10703.2.S1_x_at1/116+28712293..28718382retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g47390OsAffx.5135.1.S1_at11/116+28719941..28720587hypothetical protein
LOC_Os06g47390OsAffx.15971.1.S1_at1/116+28719941..28720587hypothetical protein
LOC_Os06g47390OsAffx.15971.1.S1_x_at1/116+28719941..28720587hypothetical protein
LOC_Os06g47400OsAffx.15972.1.S1_at11/116+28722597..28723358F-box domain containing protein
LOC_Os06g47410OsAffx.5136.1.S1_at11/116+28724243..28725531hypothetical protein
LOC_Os06g47410OsAffx.5118.1.S1_x_at3/116+28724243..28725531hypothetical protein
LOC_Os06g47420OsAffx.5118.1.S1_x_at1/116+28725889..28727266transposon protein, putative, unclassified
LOC_Os06g47430OsAffx.28148.1.S1_x_at11/116+28731634..28733317hypothetical protein
LOC_Os06g47440OsAffx.28149.1.S1_at11/116+28735302..28737622hypothetical protein
LOC_Os06g47450OsAffx.15973.1.S1_at8/116+28741346..28741710hypothetical protein
LOC_Os06g47460NANA6+28741941..28746114hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15972.1.S1_at--1021--4911Chr06:28723131..28723155 (25 bp)
GCTTCCAAACGTTCGGTTTCGTATG
LOC_Os06g47400
OsAffx.15972.1.S1_at--583--9391Chr06:28723113..28723137 (25 bp)
TCGTATGTCGGTACTTGGCAACCTT
LOC_Os06g47400
OsAffx.15972.1.S1_at--430--10871Chr06:28723099..28723123 (25 bp)
TTGGCAACCTTGCATCTCTAGGCGA
LOC_Os06g47400
OsAffx.15972.1.S1_at--691--431Chr06:28723086..28723110 (25 bp)
ATCTCTAGGCGAGTCGAGCGAACCG
LOC_Os06g47400
OsAffx.15972.1.S1_at--51--9331Chr06:28723035..28723059 (25 bp)
TCGCCAACGCTGTCACGACGACGGT
LOC_Os06g47400
OsAffx.15972.1.S1_at--420--4071Chr06:28722993..28723017 (25 bp)
CGAGACGCTCCACATTGGTTACCGG
LOC_Os06g47400
OsAffx.15972.1.S1_at--206--10631Chr06:28722956..28722980 (25 bp)
TTCGAGTGCCGGTACGCGAACGAGT
LOC_Os06g47400
OsAffx.15972.1.S1_at--231--8311Chr06:28722907..28722931 (25 bp)
GGCTAGAGCTGCACGTCCAGTGCAA
LOC_Os06g47400
OsAffx.15972.1.S1_at--923--8371Chr06:28722831..28722855 (25 bp)
GGCGACCACCGAGCTTGAGCTAGGC
LOC_Os06g47400
OsAffx.15972.1.S1_at--963--9971Chr06:28722817..28722841 (25 bp)
TTGAGCTAGGCCTGTACTGGTACGC
LOC_Os06g47400
OsAffx.15972.1.S1_at--75--9931Chr06:28722803..28722827 (25 bp)
TACTGGTACGCGGTGAGGCCGCCAC
LOC_Os06g47400
Target Sequence 
GCTTCCAAACGTTCGGTTTCGTATGTCGGTACTTGGCAACCTTGCATCTCTAGGCGAGTCGAGCGAACCGCGCGTGCAGA
GCATGGAGCGCATGCTTCGCCAACGCTGTCACGACGACGGTGGCCTGCACGACACCATCGAGACGCTCCACATTGGTTAC
CGGAAGGACGTCCCGTTCGAGTGCCGGTACGCGAACGAGTTCGTCGCGCTGGCCAACGCGTCGAGGCTAGAGCTGCACGT
CCAGTGCAAGAGGGGACTCCCTGACGAGGACGCCGGCGTGTGGTCGCTCGAGCTGCCGCCGGCGACCACCGAGCTTGAGC
TAGGCCTGTACTGGTACGCGGTGAGGCCGCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15972.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis